[Bioperl-l] mismatch string search in BioPerl?

[Martin Schenker]

Hi all!

Is there something like a mismatch string search as a module in BioPerl? I
try to find e.g. a 30 AA string (one mismatch allowed) in a sequence. I
could write some sledge-hammer code permuting happily through the string
with a "." on any possible position but perhaps someone had a
better/faster/neater idea already?!?

Thanks for any pointers!

Cheers, Martin

> Dr. Martin Schenker
> Bioinformatics/Software Eng.
> Oxford GlycoSciences (UK) Ltd
> The Forum
> 86 Milton Park
> Abingdon
> Oxon. OX14 4RY
> UK
> 
> Tel: 	+44 (0)1235 208064
> Fax:	+44 (0)1235 208012
> Mobile:	+44 (0)7762 093310
> email:    mailto:Martin.Schenker@ogs.co.uk
> World-wide Web: http://www.ogs.com
> 
> 
> 
> 


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