[Bioperl-l] Problems parsing blast report with BPlite
Gert Thijs
gert.thijs@esat.kuleuven.ac.be
Thu, 04 Apr 2002 13:16:53 +0200
This is a multi-part message in MIME format.
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Content-Type: text/plain; charset=us-ascii; format=flowed
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Hello,
While using my scripts to pars blast reports, I stumbled upon a problem, which
I do not know if it is bioperl related or comes from a slight change of format
at NCBI.
I used the following code to step through a blast output file generated by the
ncbi program 'blastcl3' in which multiple reports are stored (an example is
found in attachment).
--
while(<FILE>) {
if ( /^Query=(.*)$/ ){
seek FILE, -length($_), 1;
my $report = Bio::Tools::BPlite->new(\*FILE);
while ( my $sbjct = $report->nextSbjct){
# do some stuff
}
}
}
--
This code worked fine untill recently, when I installed bioperl-1.0 (but, I am
not sure it is a bioperl-1.0 problem, since at the same time there were also
problems with the blastcl3 program, which were caused by some server problems
at NCBI).
The problem is that the program cannot extract the next blast report from the
file. The processing of the first report was OK, but once the second query
sequence is found the program stopped.
I looked into the code of BPlite to see what was happening and I found the
following problem. The parser searches for a line starting with 'Database'
after the line starting with 'Query='. Now in the file I have include in this
mail there is no line starting with 'Database' following the second query on
line 530, this means that the parser reads all the lines in the remainder of
the file and then stops without creating the BPlite object correctly.
I found a way to fix this problem, but I am not sure if it is a good one.
I just added an extra element to check for in the if-statement on line 374 in
Bio::Tools::BPlite.pm. In the blast report there is a line following the
'Query=' line which starts with 'Sequences'.
--
Bio::Tools::BPlite.pm line 374
while( defined($_ = $self->_readline() ) ) {
# if( $_ =~ /^Database/ ) { $self->_pushback($_); last; }
if( $_ =~ /^Database|^Sequences/ ) { $self->_pushback($_); last; }
$query .= $_;
}
--
With this fix my scripts are working properly again.
many thanks,
Gert
--
+ Gert Thijs
+
+ email: gert.thijs@esat.kuleuven.ac.be
+ homepage: http://www.esat.kuleuven.ac.be/~thijs
+
+ K.U.Leuven
+ ESAT-SISTA
+ Kasteelpark Arenberg 10
+ B-3001 Leuven-Heverlee
+ Belgium
+ Tel : +32 16 32 85 88 (new number)
+ Fax : +32 16 32 19 70
--------------070307020303060002070505
Content-Type: text/plain;
name="demo.blast.out"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
filename="demo.blast.out"
BLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MUSMRP14A M83219|AnnotatedGene|gene|34|375|1|+|.|id MRP14 ;
number 1
(342 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,192,858 sequences; 867,074,787 total letters
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_009114.1| Mus musculus S100 calcium binding protein A9 (c... 678 0.0
gb|M83219.1|MUSMRP14A Mus musculus intracellular calcium-binding... 678 0.0
emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 pro... 379 e-102
ref|NM_053587.1| Rattus norvegicus S100 calcium-binding protein ... 301 2e-79
gb|L18948.1|RATMRP14 Rattus norvegicus intracellular calcium-bin... 301 2e-79
gb|AF091849.1|AF091849 Oryctolagus cuniculus calgranulin B mRNA,... 92 4e-16
dbj|D17404.1|RABMRP14 Rabbit mRNA for macrophage migration inhib... 90 2e-15
ref|NM_002965.2| Homo sapiens S100 calcium binding protein A9 (c... 68 6e-09
gb|AC011666.28|AC011666 Human Chromosome 1q21 BAC 236c22, comple... 68 6e-09
gb|AF237582.1|AF237582 Homo sapiens migration inhibitory factor-... 68 6e-09
>ref|NM_009114.1| Mus musculus S100 calcium binding protein A9 (calgranulin B)
(S100a9), mRNA
Length = 488
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 93
Query: 61 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 153
Query: 121 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 213
Query: 181 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 273
Query: 241 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 333
Query: 301 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 375
>gb|M83219.1|MUSMRP14A Mus musculus intracellular calcium-binding protein (MRP14) mRNA,
complete cds
Length = 488
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 93
Query: 61 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 153
Query: 121 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atggtggaagcacagttggcaacctttatgaagaaagagaagagaaatgaagccctcata 213
Query: 181 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgt 273
Query: 241 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgatgctgatggcaaagttgatctttgcctgtcatgagaagctgcatgagaacaaccca 333
Query: 301 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgtgggcatggccacagtcatggcaaaggctgtgggaagtaa 375
>emb|AJ250496.1|MMU250496 Mus musculus S100A9 gene for S100A9 protein exons 1-3
Length = 6991
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 152 agaaagagaagagaaatgaagccctcataaatgacatcatggaggacctggacacaaacc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6443 agaaagagaagagaaatgaagccctcataaatgacatcatggaggacctggacacaaacc 6502
Query: 212 aggacaatcagctgagctttgaggagtgtatgatgctgatggcaaagttgatctttgcct 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6503 aggacaatcagctgagctttgaggagtgtatgatgctgatggcaaagttgatctttgcct 6562
Query: 272 gtcatgagaagctgcatgagaacaacccacgtgggcatggccacagtcatggcaaaggct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6563 gtcatgagaagctgcatgagaacaacccacgtgggcatggccacagtcatggcaaaggct 6622
Query: 332 gtgggaagtaa 342
|||||||||||
Sbjct: 6623 gtgggaagtaa 6633
Score = 303 bits (153), Expect = 6e-80
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 atggccaacaaagcaccttctcagatggagcgcagcataaccaccatcatcgacaccttc 4144
Query: 61 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 catcaatactctaggaaggaaggacaccctgacaccctgagcaagaaggaattcagacaa 4204
Query: 121 atggtggaagcacagttggcaacctttatgaag 153
|||||||||||||||||||||||||||||||||
Sbjct: 4205 atggtggaagcacagttggcaacctttatgaag 4237
>ref|NM_053587.1| Rattus norvegicus S100 calcium-binding protein A9 (calgranulin B)
(S100a9), mRNA
Length = 494
Score = 301 bits (152), Expect = 2e-79
Identities = 281/324 (86%)
Strand = Plus / Plus
Query: 19 tctcagatggagcgcagcataaccaccatcatcgacaccttccatcaatactctaggaag 78
|||||| ||||||||||||||| |||||||||| | |||||||| ||||||||||||
Sbjct: 50 tctcagctggagcgcagcataagcaccatcatcaatgttttccatcagtactctaggaag 109
Query: 79 gaaggacaccctgacaccctgagcaagaaggaattcagacaaatggtggaagcacagttg 138
| ||||| ||||||||||||| |||| |||||||| | |||||||| | | |||
Sbjct: 110 tatggacatcctgacaccctgaacaaggcggaattcaaagaaatggtgaataaggacttg 169
Query: 139 gcaacctttatgaagaaagagaagagaaatgaagccctcataaatgacatcatggaggac 198
||| ||| |||||| ||||| ||||||||| ||| ||| |||||||||||||||
Sbjct: 170 ccaaattttctgaagagggagaaaagaaatgaaaatctcctaagagacatcatggaggac 229
Query: 199 ctggacacaaaccaggacaatcagctgagctttgaggagtgtatgatgctgatggcaaag 258
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 230 ctggacacaaaccaggacaatcaactgtcctttgaggagtgtatgatgctgatgggaaag 289
Query: 259 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatggccacagt 318
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 290 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatgaccacagg 349
Query: 319 catggcaaaggctgtgggaagtaa 342
|| |||||||||||||||||||||
Sbjct: 350 cacggcaaaggctgtgggaagtaa 373
>gb|L18948.1|RATMRP14 Rattus norvegicus intracellular calcium-binding protein (MRP14)
mRNA, complete cds
Length = 494
Score = 301 bits (152), Expect = 2e-79
Identities = 281/324 (86%)
Strand = Plus / Plus
Query: 19 tctcagatggagcgcagcataaccaccatcatcgacaccttccatcaatactctaggaag 78
|||||| ||||||||||||||| |||||||||| | |||||||| ||||||||||||
Sbjct: 50 tctcagctggagcgcagcataagcaccatcatcaatgttttccatcagtactctaggaag 109
Query: 79 gaaggacaccctgacaccctgagcaagaaggaattcagacaaatggtggaagcacagttg 138
| ||||| ||||||||||||| |||| |||||||| | |||||||| | | |||
Sbjct: 110 tatggacatcctgacaccctgaacaaggcggaattcaaagaaatggtgaataaggacttg 169
Query: 139 gcaacctttatgaagaaagagaagagaaatgaagccctcataaatgacatcatggaggac 198
||| ||| |||||| ||||| ||||||||| ||| ||| |||||||||||||||
Sbjct: 170 ccaaattttctgaagagggagaaaagaaatgaaaatctcctaagagacatcatggaggac 229
Query: 199 ctggacacaaaccaggacaatcagctgagctttgaggagtgtatgatgctgatggcaaag 258
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct: 230 ctggacacaaaccaggacaatcaactgtcctttgaggagtgtatgatgctgatgggaaag 289
Query: 259 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatggccacagt 318
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 290 ttgatctttgcctgtcatgagaagctgcatgagaacaacccacgtgggcatgaccacagg 349
Query: 319 catggcaaaggctgtgggaagtaa 342
|| |||||||||||||||||||||
Sbjct: 350 cacggcaaaggctgtgggaagtaa 373
>gb|AF091849.1|AF091849 Oryctolagus cuniculus calgranulin B mRNA, partial cds
Length = 480
Score = 91.7 bits (46), Expect = 4e-16
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 177 cataaatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgagga 236
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 132 cataaatgatatcatggaggacctggacacgaaccaggacaagcagctgagctttgaaga 191
Query: 237 gt 238
||
Sbjct: 192 gt 193
>dbj|D17404.1|RABMRP14 Rabbit mRNA for macrophage migration inhibitory factor-related
protein-14 (MRP-14), partial cds
Length = 114
Score = 89.7 bits (45), Expect = 2e-15
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 178 ataaatgacatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggag 237
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1 ataaatgatatcatggaggacctggacacgaaccaggacaagcagctgagctttgaagag 60
Query: 238 t 238
|
Sbjct: 61 t 61
>ref|NM_002965.2| Homo sapiens S100 calcium binding protein A9 (calgranulin B)
(S100A9), mRNA
Length = 576
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 227 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 286
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 287 tgctgatggc 296
>gb|AC011666.28|AC011666 Human Chromosome 1q21 BAC 236c22, complete sequence [Homo sapiens]
Length = 114364
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 24901 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 24842
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 24841 tgctgatggc 24832
>gb|AF237582.1|AF237582 Homo sapiens migration inhibitory factor-related protein 14 variant E
(S100A9) gene, complete cds
Length = 4804
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 3827 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3886
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 3887 tgctgatggc 3896
>gb|AF237581.1|AF237581 Homo sapiens migration inhibitory factor-related protein 14 variant P
(S100A9) gene, complete cds
Length = 4804
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 3827 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3886
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 3887 tgctgatggc 3896
>emb|AL591704.7|AL591704 Human DNA sequence from clone RP1-128L15 on chromosome 1q21.1-21.3,
complete sequence [Homo sapiens]
Length = 164144
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 56315 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 56374
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 56375 tgctgatggc 56384
>gb|AF086362.1|HUMZD66A09 Homo sapiens full length insert cDNA clone ZD66A09
Length = 567
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 206 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 265
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 266 tgctgatggc 275
>gb|M26311.1|HUMCFA Human cystic fibrosis antigen mRNA, complete cds
Length = 565
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 213 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 272
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 273 tgctgatggc 282
>emb|X06233.1|HSMRP14 Human mRNA for calcium-binding protein in macrophages (MRP-14)
macrophage migration inhibitory factor (MIF)-related
protein
Length = 462
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 226 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 285
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 286 tgctgatggc 295
>gb|M21064.1|HUMMRP14A Human migration inhibitory factor-related protein 14 (MRP14) gene,
complete cds
Length = 4439
Score = 67.9 bits (34), Expect = 6e-09
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 185 acatcatggaggacctggacacaaaccaggacaatcagctgagctttgaggagtgtatga 244
||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct: 3479 acatcatggaggacctggacacaaatgcagacaagcagctgagcttcgaggagttcatca 3538
Query: 245 tgctgatggc 254
||||||||||
Sbjct: 3539 tgctgatggc 3548
>gb|AC104771.4| Homo sapiens BAC clone RP11-1E1 from 4, complete sequence
Length = 146586
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 95 ccctgagcaagaaggaattcag 116
||||||||||||||||||||||
Sbjct: 35220 ccctgagcaagaaggaattcag 35199
>gb|AC068287.5| Homo sapiens BAC clone RP11-532L9 from 2, complete sequence
Length = 160222
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 151 aagaaagagaagagaaatgaag 172
||||||||||||||||||||||
Sbjct: 78845 aagaaagagaagagaaatgaag 78824
>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence
Length = 177954
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 153 gaaagagaagagaaatgaagc 173
|||||||||||||||||||||
Sbjct: 40880 gaaagagaagagaaatgaagc 40860
>gb|AC008844.5|AC008844 Homo sapiens chromosome 5 clone CTD-2157L4, complete sequence
Length = 113759
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 153 gaaagagaagagaaatgaagc 173
|||||||||||||||||||||
Sbjct: 49789 gaaagagaagagaaatgaagc 49769
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 29, 2002 12:33 AM
Number of letters in database: 867,074,787
Number of sequences in database: 1,192,858
Lambda K H
1.37 0.711 5.30e-313
Gapped
Lambda K H
1.37 0.711 5.30e-313
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,258,003
Number of Sequences: 1192858
Number of extensions: 1258003
Number of successful extensions: 28015
Number of sequences better than 10.0: 123
length of query: 342
length of database: 5,162,042,083
effective HSP length: 20
effective length of query: 322
effective length of database: 5,138,184,923
effective search space: 1654495545206
effective search space used: 1654495545206
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
Query= AF061272 AF061272|AnnotatedGene|gene|161|820|1|+|.|id Mcl ;
number 1
(660 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_010819.1| Mus musculus C-type (calcium dependent, carbohy... 1308 0.0
gb|AF061272.1|AF061272 Mus musculus C-type lectin (Mcl) mRNA, co... 1308 0.0
ref|XM_062656.2| Homo sapiens C-type lectin-like receptor (CLEC-... 153 3e-34
ref|NM_080387.1| Homo sapiens C-type lectin-like receptor (CLEC-... 153 3e-34
gb|AF411850.1|AF411850 Homo sapiens C-type lectin-like receptor ... 153 3e-34
gb|AC079632.4| Oryza sativa chromosome 10 clone OSJNBa0046L02, c... 40 2.7
gb|AC108883.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.7
gb|AC073958.4|AC073958 Homo sapiens BAC clone RP11-533L22 from 7... 40 2.7
gb|AC010913.9|AC010913 Homo sapiens BAC clone RP11-44N22 from 2,... 40 2.7
gb|AC090952.2|AC090952 Homo sapiens chromosome 3 clone RP11-588H... 40 2.7
>ref|NM_010819.1| Mus musculus C-type (calcium dependent, carbohydrate recognition
domain) lectin, superfamily member 9 (Clecsf8), mRNA
Length = 918
Score = 1308 bits (660), Expect = 0.0
Identities = 660/660 (100%)
Strand = Plus / Plus
Query: 1 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 220
Query: 61 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 280
Query: 121 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 340
Query: 181 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 400
Query: 241 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 460
Query: 301 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 520
Query: 361 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 580
Query: 421 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 640
Query: 481 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 700
Query: 541 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 760
Query: 601 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 820
>gb|AF061272.1|AF061272 Mus musculus C-type lectin (Mcl) mRNA, complete cds
Length = 918
Score = 1308 bits (660), Expect = 0.0
Identities = 660/660 (100%)
Strand = Plus / Plus
Query: 1 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgtggctggaagaatcccaaatgaaatcaaaaggtacccgacatccccaactgatccct 220
Query: 61 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcgtcttcgctgttgtttccatctcgttccttagtgcttgctttatttcaacttgtttg 280
Query: 121 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgactcatcattactttttacgctggacgagaggaagtgtggtgaaactgtcagactac 340
Query: 181 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacacgagagtaacgtgcatccgagaggagccacagcctggagctacaggaggtacttgg 400
Query: 241 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acctgctgtcctgttagctggagagccttccagtctaactgttactttcctcttaatgac 460
Query: 301 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaccagacctggcatgagagcgagaggaactgctcagggatgagcagtcatctggtgacc 520
Query: 361 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcaacaccgaagcagaacagaattttgtgacccagcttttggataaacggttttcttat 580
Query: 421 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcctgggacttgctgatgagaatgtggaaggccaatggcagtgggtggacaagacgcca 640
Query: 481 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttaacccacacacggtattctgggaaaagggggaatccaatgactttatggaagaagac 700
Query: 541 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtgttgtccttgttcatgtccatgaaaaatgggtctggaatgactttccttgtcacttt 760
Query: 601 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaggtgagaaggatttgtaaattacctggaataacattcaattggaagccctcgaagtga 820
>ref|XM_062656.2| Homo sapiens C-type lectin-like receptor (CLEC-6), mRNA
Length = 947
Score = 153 bits (77), Expect = 3e-34
Identities = 305/381 (80%)
Strand = Plus / Plus
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
|||||||||||||||||| ||||| || |||||||||| ||||||| |||| ||| |||
Sbjct: 452 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 511
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
||| || |||||||| ||||||||| | |||||| ||||||||| ||| ||||| ||
Sbjct: 512 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 571
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
||||| ||| | | ||| || |||||| |||| |||| |||||||| |||||| ||
Sbjct: 572 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 631
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
|||||||| |||| || |||| ||||||||| |||||||||||||||||| || ||
Sbjct: 632 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 691
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
||||||| | ||| ||| || | ||| | || |||| |||||||||| |||||| |
Sbjct: 692 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 751
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
| ||| || ||||||| ||||||||| |||||||| ||||||| | || ||||||||
Sbjct: 752 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 811
Query: 618 taaattacctggaataacatt 638
|||| ||||||||| ||||||
Sbjct: 812 taaaatacctggaacaacatt 832
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
|||||| ||| |||||||||||||||||| |||||| |||||| | ||||||
Sbjct: 294 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 346
>ref|NM_080387.1| Homo sapiens C-type lectin-like receptor (CLEC-6), mRNA
Length = 648
Score = 153 bits (77), Expect = 3e-34
Identities = 305/381 (80%)
Strand = Plus / Plus
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
|||||||||||||||||| ||||| || |||||||||| ||||||| |||| ||| |||
Sbjct: 261 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 320
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
||| || |||||||| ||||||||| | |||||| ||||||||| ||| ||||| ||
Sbjct: 321 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 380
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
||||| ||| | | ||| || |||||| |||| |||| |||||||| |||||| ||
Sbjct: 381 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 440
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
|||||||| |||| || |||| ||||||||| |||||||||||||||||| || ||
Sbjct: 441 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 500
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
||||||| | ||| ||| || | ||| | || |||| |||||||||| |||||| |
Sbjct: 501 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 560
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
| ||| || ||||||| ||||||||| |||||||| ||||||| | || ||||||||
Sbjct: 561 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 620
Query: 618 taaattacctggaataacatt 638
|||| ||||||||| ||||||
Sbjct: 621 taaaatacctggaacaacatt 641
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
|||||| ||| |||||||||||||||||| |||||| |||||| | ||||||
Sbjct: 103 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 155
>gb|AF411850.1|AF411850 Homo sapiens C-type lectin-like receptor CLEC-6 mRNA, complete cds
Length = 753
Score = 153 bits (77), Expect = 3e-34
Identities = 305/381 (80%)
Strand = Plus / Plus
Query: 258 ctggagagccttccagtctaactgttactttcctcttaatgacaaccagacctggcatga 317
|||||||||||||||||| ||||| || |||||||||| ||||||| |||| ||| |||
Sbjct: 324 ctggagagccttccagtccaactgctattttcctcttactgacaacaagacgtgggctga 383
Query: 318 gagcgagaggaactgctcagggatgagcagtcatctggtgaccatcaacaccgaagcaga 377
||| || |||||||| ||||||||| | |||||| ||||||||| ||| ||||| ||
Sbjct: 384 gagtgaaaggaactgttcagggatgggggcccatctgatgaccatcagcacggaagctga 443
Query: 378 acagaattttgtgacccagcttttggataaacggttttcttatttcctgggacttgctga 437
||||| ||| | | ||| || |||||| |||| |||| |||||||| |||||| ||
Sbjct: 444 gcagaactttattattcagtttctggatagacggctttcctatttccttggacttagaga 503
Query: 438 tgagaatgtggaaggccaatggcagtgggtggacaagacgccatttaacccacacacggt 497
|||||||| |||| || |||| ||||||||| |||||||||||||||||| || ||
Sbjct: 504 tgagaatgccaaaggtcagtggcgttgggtggaccagacgccatttaacccacgcagagt 563
Query: 498 attctgggaaaagggggaatccaatgactttatggaagaagactgtgttgtccttgttca 557
||||||| | ||| ||| || | ||| | || |||| |||||||||| |||||| |
Sbjct: 564 attctggcataagaatgaacccgacaactctcagggagaaaactgtgttgttcttgttta 623
Query: 558 tgtccatgaaaaatgggtctggaatgactttccttgtcactttgaggtgagaaggatttg 617
| ||| || ||||||| ||||||||| |||||||| ||||||| | || ||||||||
Sbjct: 624 taaccaagataaatgggcctggaatgatgttccttgtaactttgaagcaagtaggatttg 683
Query: 618 taaattacctggaataacatt 638
|||| ||||||||| ||||||
Sbjct: 684 taaaatacctggaacaacatt 704
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 103 tttatttcaacttgtttggtgactcatcattactttttacgctggacgagagg 155
|||||| ||| |||||||||||||||||| |||||| |||||| | ||||||
Sbjct: 166 tttattgcaagttgtttggtgactcatcacaacttttcacgctgtaagagagg 218
>gb|AC079632.4| Oryza sativa chromosome 10 clone OSJNBa0046L02, complete sequence
Length = 142381
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 520 aatgactttatggaagaaga 539
||||||||||||||||||||
Sbjct: 12639 aatgactttatggaagaaga 12620
>gb|AC108883.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1136E01,
from chromosome 10, complete sequence
Length = 113856
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 520 aatgactttatggaagaaga 539
||||||||||||||||||||
Sbjct: 87114 aatgactttatggaagaaga 87133
>gb|AC073958.4|AC073958 Homo sapiens BAC clone RP11-533L22 from 7, complete sequence
Length = 168991
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 432 tgctgatgagaatgtggaag 451
||||||||||||||||||||
Sbjct: 128769 tgctgatgagaatgtggaag 128750
>gb|AC010913.9|AC010913 Homo sapiens BAC clone RP11-44N22 from 2, complete sequence
Length = 209161
Score = 40.1 bits (20), Expect = 2.7
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 564 tgaaaaatgggtctggaatgactttcct 591
||||| |||||| |||||||||||||||
Sbjct: 23488 tgaaacatgggtgtggaatgactttcct 23461
>gb|AC090952.2|AC090952 Homo sapiens chromosome 3 clone RP11-588H7 map 3p, complete sequence
Length = 189717
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 310 tggcatgagagcgagaggaa 329
||||||||||||||||||||
Sbjct: 43905 tggcatgagagcgagaggaa 43924
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 310 tggcatgagagcgagaggaa 329
||||||||||||||||||||
Sbjct: 42393 tggcatgagagcgagaggaa 42374
>emb|AL662836.7| Mouse DNA sequence from clone RP23-313L19 on chromosome 11
Length = 120749
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 589 ccttgtcactttgaggtgag 608
||||||||||||||||||||
Sbjct: 27158 ccttgtcactttgaggtgag 27139
>emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chromosome 13
Length = 150986
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 70 gctgttgtttccatctcgtt 89
||||||||||||||||||||
Sbjct: 66153 gctgttgtttccatctcgtt 66134
>emb|AL354733.15|AL354733 Human DNA sequence from clone RP11-575L7 on chromosome 9, complete
sequence [Homo sapiens]
Length = 189579
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 103 tttatttcaacttgtttggt 122
||||||||||||||||||||
Sbjct: 91846 tttatttcaacttgtttggt 91827
>emb|AL353743.22|AL353743 Human DNA sequence from clone RP11-213G2 on chromosome 9, complete
sequence [Homo sapiens]
Length = 181864
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 tttatttcaacttgtttggt 122
||||||||||||||||||||
Sbjct: 72332 tttatttcaacttgtttggt 72351
>emb|AL162832.6|CNS01RI3 Human chromosome 14 DNA sequence BAC R-544I20 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 158424
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 203 gagaggagccacagcctgga 222
||||||||||||||||||||
Sbjct: 78362 gagaggagccacagcctgga 78381
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 29, 2002 12:33 AM
Number of letters in database: 867,074,787
Number of sequences in database: 1,192,858
Lambda K H
1.37 0.711 5.30e-313
Gapped
Lambda K H
1.37 0.711 5.30e-313
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,933,610
Number of Sequences: 1192858
Number of extensions: 1933610
Number of successful extensions: 37681
Number of sequences better than 10.0: 15
length of query: 660
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 639
effective length of database: 5,136,992,065
effective search space: 3282537929535
effective search space used: 3282537929535
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
Query= MMLHDC X57437|AnnotatedGene|gene|75|2063|1|+|.|id unnamed_gene0
; number 1
(701 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_008230.2| Mus musculus histidine decarboxylase cluster (H... 1390 0.0
emb|X57437.1|MMLHDC M.musculus mRNA for L-histidine decarboxylase 1390 0.0
gb|AF109137.1|AF109137 Mus musculus histidine decarboxylase (Hdc... 1358 0.0
gb|M29591.1|RATHIDCX Rat histidine decarboxylase (Hdc) mRNA, com... 918 0.0
gb|M38759.1|RATABP1 Rat androgen binding protein (ABP) mRNA, com... 904 0.0
ref|XM_083929.1| Homo sapiens histidine decarboxylase (HDC), mRNA 670 0.0
ref|XM_007561.3| Homo sapiens similar to histidine decarboxylase... 670 0.0
gb|M60445.1|HUMHDC Human histidine decarboxylase (HDC) mRNA, com... 670 0.0
ref|NM_002112.1| Homo sapiens histidine decarboxylase (HDC), mRNA 646 0.0
emb|X54297.1|HSHISDEC Human mRNA for histidine decarboxylase (EC... 646 0.0
>ref|NM_008230.2| Mus musculus histidine decarboxylase cluster (Hdc), mRNA
Length = 2371
Score = 1390 bits (701), Expect = 0.0
Identities = 701/701 (100%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 134
Query: 61 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 194
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 254
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 314
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 374
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 434
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 494
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 554
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 614
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 674
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 734
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gacgacaacttctcactccgaggagaagctctccagaaagc 775
>emb|X57437.1|MMLHDC M.musculus mRNA for L-histidine decarboxylase
Length = 2371
Score = 1390 bits (701), Expect = 0.0
Identities = 701/701 (100%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 134
Query: 61 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 194
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 254
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 314
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 374
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 434
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 494
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 554
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 614
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 674
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 734
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gacgacaacttctcactccgaggagaagctctccagaaagc 775
>gb|AF109137.1|AF109137 Mus musculus histidine decarboxylase (Hdc) mRNA, complete cds
Length = 2224
Score = 1358 bits (685), Expect = 0.0
Identities = 697/701 (99%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagggaaagag 79
Query: 61 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 atggtggattacatctcccagtacctgagcactgtgcgggagaggcaggtgactccaaat 139
Query: 121 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgaggaacccgacagc 199
Query: 181 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgggacagcatctttggggacattgaacgagtcatcatgcctggggtggttcactggcag 259
Query: 241 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagac 319
Query: 301 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgctggccgatgccattaactgcttaggattcacgtgggcatctagcccagcttgcaca 379
Query: 361 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagctggagatgaacatcatggactggctggcgaagatgctggggctcccggagtacttc 439
Query: 421 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgtcagcgaatcc 499
Query: 481 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgag 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 500 actttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgaaagcatgcgag 559
Query: 541 cccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctctgatcaggct 600
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 cccgatgctaatgagtcctccctgaacgctcggctcgttgcctacacctctgatcaggct 619
Query: 601 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctacctgtg 679
Query: 661 gacgacaacttctcactccgaggagaagctctccagaaagc 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacgacaacttctcactccgaggagaagctctccagaaagc 720
>gb|M29591.1|RATHIDCX Rat histidine decarboxylase (Hdc) mRNA, complete cds
Length = 2360
Score = 918 bits (463), Expect = 0.0
Identities = 610/659 (92%)
Strand = Plus / Plus
Query: 40 taccgagctagagggaaagagatggtggattacatctcccagtacctgagcactgtgcgg 99
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 103 taccaagctagagggaaagagatggtggattacatctgccagtacctgagcaccgtgcgg 162
Query: 100 gagaggcaggtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagt 159
|||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| | |||
Sbjct: 163 gagaggcaggtgaccccaaatgtgaagcctgggtacctgcgagcccagataccttcaagt 222
Query: 160 gctcccgaggaacccgacagctgggacagcatctttggggacattgaacgagtcatcatg 219
||||| |||||||||||||||||||| |||||||||||||||||||| | | ||||||||
Sbjct: 223 gctcctgaggaacccgacagctgggatagcatctttggggacattgagcaaatcatcatg 282
Query: 220 cctggggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctca 279
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 283 cctggggtggttcactggcagagcccccacatgcacgcctactatccggctctcacctct 342
Query: 280 tggccatccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgg 339
|||||||||||||||||||| |||||||| |||||||| |||||||| || |||||||||
Sbjct: 343 tggccatccctgctaggagatatgctggctgatgccatcaactgcttggggttcacgtgg 402
Query: 340 gcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagatg 399
|| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcttccagcccggcctgcacagagctggagatgaacatcatggactggctggcgaagatg 462
Query: 400 ctggggctcccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtctta 459
|||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||
Sbjct: 463 ctggggctcccggacttcttcctgcaccaccatcccagcagccaggggggaggcgtcttg 522
Query: 460 cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 cagaggactgtcagcgaatccactttaattgccctgctggcagcaaggaagaacaaaatc 582
Query: 520 ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
|||| ||||| |||| |||||| ||||| | |||||||| |||||||||||||| |||
Sbjct: 583 ctagaaatgaaagcgcatgagcccaatgctgatgagtcctctctgaacgctcgtcttgtt 642
Query: 580 gcctacacctctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtg 639
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gcctatgcctctgaccaggctcactcttcagtggagaaggctggcttgatttcccttgtg 702
Query: 640 aagatcagatttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aagatcaaatttctgcctgtggacgacaacttctcactccgaggagaagctctccagaa 761
Score = 46.1 bits (23), Expect = 0.047
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaatacc 31
|||||||||||| ||||||||| ||||||||
Sbjct: 76 atgatggagcccagtgaataccatgaatacc 106
>gb|M38759.1|RATABP1 Rat androgen binding protein (ABP) mRNA, complete cds
Length = 2975
Score = 904 bits (456), Expect = 0.0
Identities = 600/648 (92%)
Strand = Plus / Plus
Query: 51 agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 729 agggaaagagatggtggattacatctgccagtacctgagcaccgtgcgggagaggcaggt 788
Query: 111 gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
||| ||||||||| ||||||| ||||||||||||||| ||||| | |||||||| |||||
Sbjct: 789 gaccccaaatgtgaagcctgggtacctgcgagcccagataccttcaagtgctcctgagga 848
Query: 171 acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtggt 230
||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 849 acccgacagctgggatagcatctttggggacattgagcaaatcatcatgcctggggtggt 908
Query: 231 tcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatccct 290
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 909 tcactggcagagcccccacatgcacgcctactatccggctctcacctcttggccatccct 968
Query: 291 gctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagccc 350
||||||||| |||||||| |||||||| |||||||| || ||||||||||| || |||||
Sbjct: 969 gctaggagatatgctggctgatgccatcaactgcttggggttcacgtgggcttccagccc 1028
Query: 351 agcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctccc 410
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ggcctgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctccc 1088
Query: 411 ggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcactgt 470
||| | |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 1089 ggacttcttcctgcaccaccatcccagcagccaggggggaggcgtcttgcagaggactgt 1148
Query: 471 cagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatgac 530
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1149 cagcgaatccactttaattgccctgctggcagcaaggaagaacaaaatcctagaaatgaa 1208
Query: 531 agcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacctc 590
|||| |||||| ||||| | |||||||| |||||||||||||| |||||||| ||||
Sbjct: 1209 agcgcatgagcccaatgctgatgagtcctctctgaacgctcgtcttgttgcctatgcctc 1268
Query: 591 tgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatt 650
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1269 tgaccaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaaatt 1328
Query: 651 tctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 tctgcctgtggacgacaacttctcactccgaggagaagctctccagaa 1376
>ref|XM_083929.1| Homo sapiens histidine decarboxylase (HDC), mRNA
Length = 2398
Score = 670 bits (338), Expect = 0.0
Identities = 572/650 (88%)
Strand = Plus / Plus
Query: 49 agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
|| || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
|||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
|| || || |||||||||||||||||| ||||||||||| |||| || |||||||| ||
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
|| ||| ||||| |||||||||| |||||||||| || ||||| ||| | ||||||||
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 549
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
| | ||| |||||||||||| | ||||||| ||| || || || ||||| ||||| ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779
>ref|XM_007561.3| Homo sapiens similar to histidine decarboxylase (H. sapiens)
(LOC145642), mRNA
Length = 2397
Score = 670 bits (338), Expect = 0.0
Identities = 572/650 (88%)
Strand = Plus / Plus
Query: 49 agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
|| || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
|||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
|| || || |||||||||||||||||| ||||||||||| |||| || |||||||| ||
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
|| ||| ||||| |||||||||| |||||||||| || ||||| ||| | ||||||||
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 549
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
| | ||| |||||||||||| | ||||||| ||| || || || ||||| ||||| ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779
>gb|M60445.1|HUMHDC Human histidine decarboxylase (HDC) mRNA, complete cds
Length = 2355
Score = 670 bits (338), Expect = 0.0
Identities = 572/650 (88%)
Strand = Plus / Plus
Query: 49 agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 79 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 138
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 139 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 198
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 199 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 258
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
|| || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 259 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 318
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
|||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 319 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 378
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
|| || || |||||||||||||||||| ||||||||||| |||| || |||||||| ||
Sbjct: 379 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 438
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
|| ||| ||||| |||||||||| |||||||||| || ||||| ||| | ||||||||
Sbjct: 439 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagagcacg 498
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 499 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 558
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
| | ||| |||||||||||| | ||||||| ||| || || || ||||| ||||| ||
Sbjct: 559 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 618
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 619 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 678
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 679 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 728
>ref|NM_002112.1| Homo sapiens histidine decarboxylase (HDC), mRNA
Length = 2396
Score = 646 bits (326), Expect = 0.0
Identities = 569/650 (87%)
Strand = Plus / Plus
Query: 49 agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
|| || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
|||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
|| || || |||||||||||||||||| ||||||||||| |||| || |||||||| ||
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
|| ||| ||||| |||||||||| |||||||||| || ||||| ||| | ||| ||
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagcagacg 549
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
| | ||| |||||||||||| | ||||||| ||| || || || ||||| ||||| ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779
>emb|X54297.1|HSHISDEC Human mRNA for histidine decarboxylase (EC 4.1.1.22)
Length = 2396
Score = 646 bits (326), Expect = 0.0
Identities = 569/650 (87%)
Strand = Plus / Plus
Query: 49 agagggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcag 108
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 130 agagggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgt 189
Query: 109 gtgactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgag 168
||||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||
Sbjct: 190 gtgacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgag 249
Query: 169 gaacccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gaccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 309
Query: 229 gttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggccatcc 288
|| || |||||||||||||| |||||||||||||| || || || ||||| ||||| |||
Sbjct: 310 gtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggccctcc 369
Query: 289 ctgctaggagacatgctggccgatgccattaactgcttaggattcacgtgggcatctagc 348
|||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct: 370 ctgctaggagacatgctggctgatgccatcaactgcttgggattcacctgggcatccagc 429
Query: 349 ccagcttgcacagagctggagatgaacatcatggactggctggcgaagatgctggggctc 408
|| || || |||||||||||||||||| ||||||||||| |||| || |||||||| ||
Sbjct: 430 cctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaatgctgggactt 489
Query: 409 ccggagtacttcctgcaccaccatcccagcagccgagggggaggtgtcttacagagcact 468
|| ||| ||||| |||||||||| |||||||||| || ||||| ||| | ||| ||
Sbjct: 490 ccagagcacttcttgcaccaccaccccagcagccagggcggaggcgtcctgcagcagacg 549
Query: 469 gtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatcctagcaatg 528
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 550 gtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatcctggaaatg 609
Query: 529 acagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgttgcctacacc 588
| | ||| |||||||||||| | ||||||| ||| || || || ||||| ||||| ||
Sbjct: 610 aaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtggcctatgcc 669
Query: 589 tctgatcaggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcaga 648
||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
Sbjct: 670 tctgaccaggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaa 729
Query: 649 tttctacctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 730 tttctgcctgtggatgacaacttctcactccgaggggaagctcttcagaa 779
>gb|AF345330.1|AF345330 Mesocricetus auratus histidine decarboxylase mRNA, partial cds
Length = 471
Score = 537 bits (271), Expect = e-150
Identities = 400/443 (90%)
Strand = Plus / Plus
Query: 255 cgcctactatcctgctcttacctcatggccatccctgctaggagacatgctggccgatgc 314
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 1 cgcctactatcctgctcttacctcttggccatccctgctaggagatatgctggctgatgc 60
Query: 315 cattaactgcttaggattcacgtgggcatctagcccagcttgcacagagctggagatgaa 374
||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||
Sbjct: 61 cattaactgcttaggattcacatgggcttccagtccagcgtgcacagagctggagatgag 120
Query: 375 catcatggactggctggcgaagatgctggggctcccggagtacttcctgcaccaccatcc 434
| ||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 121 cgtcatggactggctggtgaagatgctggggctccctgagtacttcttgcatcaccatcc 180
Query: 435 cagcagccgagggggaggtgtcttacagagcactgtcagcgaatccactttaattgccct 494
| |||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 181 cggcagccaggggggaggcgtcttgcagagcactgtcagcgaatccactttgattgccct 240
Query: 495 gctggcagcaagaaagaacaaaatcctagcaatgacagcgtgcgagcccgatgctaacga 554
| |||| ||||| |||||||||||||||| |||| | | |||||||||||| ||||
Sbjct: 241 gttggctgcaaggaagaacaaaatcctagaaatgcaacagattgagcccgatgctgacga 300
Query: 555 gtcctccctgaacgctcgtctcgttgcctacacctctgatcaggctcactcttcagtgga 614
|||||| ||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||||
Sbjct: 301 gtcctctctgaatgctcgtctcattgcctatgcctctgaccaggctcactcctcagtgga 360
Query: 615 gaaggctggcttgatttcccttgtgaagatcagatttctacctgtggacgacaacttctc 674
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 361 gaaggctggtttgatttcccttgtgaagatgagatttctgcctgtggacgacaacttctc 420
Query: 675 actccgaggagaagctctccaga 697
|||||||||||||||||| ||||
Sbjct: 421 actccgaggagaagctcttcaga 443
>gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110H11 map 15q21.1, complete
sequence
Length = 117627
Score = 242 bits (122), Expect = 4e-61
Identities = 164/178 (92%)
Strand = Plus / Minus
Query: 51 agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 16740 agggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgtgt 16681
Query: 111 gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct: 16680 gacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgagga 16621
Query: 171 acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16620 ccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 16563
Score = 127 bits (64), Expect = 2e-26
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 225 ggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggcc 284
|||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 11849 ggtggtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggcc 11790
Query: 285 atccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtggg 340
||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct: 11789 ctccctgctaggagacatgctggctgatgccatcaactgcttgggattcacctggg 11734
Score = 125 bits (63), Expect = 6e-26
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 596 aggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctac 655
|||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||| |
Sbjct: 7606 aggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaatttctgc 7547
Query: 656 ctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 7546 ctgtggatgacaacttctcactccgaggggaagctcttcagaa 7504
Score = 109 bits (55), Expect = 4e-21
Identities = 118/139 (84%)
Strand = Plus / Minus
Query: 460 cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 7998 cagagcacggtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatc 7939
Query: 520 ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
|| | ||||| | ||| |||||||||||| | ||||||| ||| || || || |||||
Sbjct: 7938 ctggaaatgaaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtg 7879
Query: 580 gcctacacctctgatcagg 598
||||| ||||||| ||||
Sbjct: 7878 gcctatgcctctgaccagg 7860
Score = 95.6 bits (48), Expect = 6e-17
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 339 ggcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagat 398
|||||| ||||| || || |||||||||||||||||| ||||||||||| |||| || ||
Sbjct: 10879 ggcatccagccctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaat 10820
Query: 399 gctggggctcccggagtacttcctgcaccaccatcccagcagcc 442
|||||| || || ||| ||||| |||||||||| ||||||||||
Sbjct: 10819 gctgggacttccagagcacttcttgcaccaccaccccagcagcc 10776
>dbj|D16583.1|HUMLHDC Human gene for L-histidine decarboxylase, complete cds
Length = 32351
Score = 242 bits (122), Expect = 4e-61
Identities = 164/178 (92%)
Strand = Plus / Plus
Query: 51 agggaaagagatggtggattacatctcccagtacctgagcactgtgcgggagaggcaggt 110
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 9598 agggagagagatggtggattacatctgccagtacctgagcactgtgcgggagagacgtgt 9657
Query: 111 gactccaaatgtgcagcctggatacctgcgagcccagctacctgcgagtgctcccgagga 170
||| ||| | ||||||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct: 9658 gacgccagacgtgcagcctggctacctgcgagcccagctgcctgagagtgctcctgagga 9717
Query: 171 acccgacagctgggacagcatctttggggacattgaacgagtcatcatgcctggggtg 228
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9718 ccccgacagctgggacagcatctttggggacattgaacgaatcatcatgcctggggtg 9775
Score = 127 bits (64), Expect = 2e-26
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 225 ggtggttcactggcagagcccccacatgcacgcctactatcctgctcttacctcatggcc 284
|||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||
Sbjct: 14490 ggtggtacattggcagagcccccatatgcacgcctactacccagccctcacctcttggcc 14549
Query: 285 atccctgctaggagacatgctggccgatgccattaactgcttaggattcacgtggg 340
||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct: 14550 ctccctgctaggagacatgctggctgatgccatcaactgcttgggattcacctggg 14605
Score = 125 bits (63), Expect = 6e-26
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 596 aggctcactcttcagtggagaaggctggcttgatttcccttgtgaagatcagatttctac 655
|||||||||| || ||||| |||||||| |||||||||||||||||||| | |||||| |
Sbjct: 18636 aggctcactcctctgtggaaaaggctggtttgatttcccttgtgaagatgaaatttctgc 18695
Query: 656 ctgtggacgacaacttctcactccgaggagaagctctccagaa 698
||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 18696 ctgtggatgacaacttctcactccgaggggaagctcttcagaa 18738
Score = 109 bits (55), Expect = 4e-21
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 460 cagagcactgtcagcgaatccactttaattgccctgctggcagcaagaaagaacaaaatc 519
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 18244 cagagcacggtcagtgaatccactttgattgccctgctggcagcaaggaagaacaaaatc 18303
Query: 520 ctagcaatgacagcgtgcgagcccgatgctaacgagtcctccctgaacgctcgtctcgtt 579
|| | ||||| | ||| |||||||||||| | ||||||| ||| || || || |||||
Sbjct: 18304 ctggaaatgaaaacgtctgagcccgatgctgatgagtcctgcctaaatgcccgactcgtg 18363
Query: 580 gcctacacctctgatcagg 598
||||| ||||||| ||||
Sbjct: 18364 gcctatgcctctgaccagg 18382
Score = 95.6 bits (48), Expect = 6e-17
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 339 ggcatctagcccagcttgcacagagctggagatgaacatcatggactggctggcgaagat 398
|||||| ||||| || || |||||||||||||||||| ||||||||||| |||| || ||
Sbjct: 15460 ggcatccagccctgcgtgtacagagctggagatgaacgtcatggactggttggcaaaaat 15519
Query: 399 gctggggctcccggagtacttcctgcaccaccatcccagcagcc 442
|||||| || || ||| ||||| |||||||||| ||||||||||
Sbjct: 15520 gctgggacttccagagcacttcttgcaccaccaccccagcagcc 15563
>gb|S67000.1|S67000 L-histidine decarboxylase {promoter} [mice, mastocytoma P-815
cells, Genomic, 480 nt]
Length = 480
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 449
>dbj|AB039880.1|AB039880 Mus musculus gene for L-histidine decarboxylase, exon 1, partial cds
Length = 2127
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 atgatggagccctgtgaataccgtgaataccgtgaatactaccgagctagagg 1257
>ref|XM_080380.1| Histidine decarboxylase (Hdc), mRNA
Length = 3270
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
||||||||||||||||||| ||| || || | ||| ||| ||||| || || ||||||
Sbjct: 448 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 507
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 508 ctggcggatgcgattaactgcctgggattcacctgggc 545
>ref|NM_078955.1| Drosophila melanogaster Histidine decarboxylase (Hdc), mRNA
Length = 3312
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
||||||||||||||||||| ||| || || | ||| ||| ||||| || || ||||||
Sbjct: 448 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 507
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 508 ctggcggatgcgattaactgcctgggattcacctgggc 545
>gb|AC099029.1| Drosophila melanogaster, chromosome 2R, region 46D-47A, BAC clone
BACR09J12, complete sequence
Length = 189620
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
||||||||||||||||||| ||| || || | ||| ||| ||||| || || ||||||
Sbjct: 6031 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 5972
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 5971 ctggcggatgcgattaactgcctgggattcacctgggc 5934
>gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
BACR48F07, complete sequence
Length = 175681
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
||||||||||||||||||| ||| || || | ||| ||| ||||| || || ||||||
Sbjct: 42512 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 42571
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 42572 ctggcggatgcgattaactgcctgggattcacctgggc 42609
>gb|AE003830.2|AE003830 Drosophila melanogaster genomic scaffold 142000013386047 section 13 of
52, complete sequence
Length = 261846
Score = 60.0 bits (30), Expect = 3e-06
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 244 ccccacatgcacgcctactatcctgctcttacctcatggccatccctgctaggagacatg 303
||||||||||||||||||| ||| || || | ||| ||| ||||| || || ||||||
Sbjct: 132905 ccccacatgcacgcctactttccggccctcaactccatgccttccctactgggcgacatg 132964
Query: 304 ctggccgatgccattaactgcttaggattcacgtgggc 341
||||| ||||| ||||||||| | |||||||| |||||
Sbjct: 132965 ctggcggatgcgattaactgcctgggattcacctgggc 133002
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 29, 2002 12:33 AM
Number of letters in database: 867,074,787
Number of sequences in database: 1,192,858
Lambda K H
1.37 0.711 5.30e-313
Gapped
Lambda K H
1.37 0.711 5.30e-313
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,642,767
Number of Sequences: 1192858
Number of extensions: 1642767
Number of successful extensions: 31090
Number of sequences better than 10.0: 55
length of query: 701
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 680
effective length of database: 5,136,992,065
effective search space: 3493154604200
effective search space used: 3493154604200
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
Query= MMCYTOKNA X70058|AnnotatedGene|gene|734|2040|1|+|.|id
unnamed_gene0 ; number 1
(701 letters)
Searching... please wait.. done
Score E
Sequences producing significant alignments: (bits) Value
emb|X70058.1|MMCYTOKNA M.musculus cytokine gene 1390 0.0
gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, c... 1382 0.0
emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chr... 1382 0.0
emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the... 1382 0.0
gb|AF154245.1|AF154245 Rattus norvegicus chemotactic protein-3 g... 222 4e-55
ref|NM_013654.1| Mus musculus small inducible cytokine A7 (Scya7... 151 1e-33
gb|AF128194.1|AF128194 Mus musculus strain SJL/J small inducible... 151 1e-33
gb|AF128193.1|AF128193 Mus musculus strain B10.S/J small inducib... 151 1e-33
gb|S71251.1|S71251 monocyte chemotactic protein-3 [mice, macroph... 151 1e-33
emb|Z12297.1|MMINTRCRN M.musculus mRNA for intercrine 151 1e-33
>emb|X70058.1|MMCYTOKNA M.musculus cytokine gene
Length = 2559
Score = 1390 bits (701), Expect = 0.0
Identities = 701/701 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 793
Query: 61 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 853
Query: 121 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 913
Query: 181 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 973
Query: 241 attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 1033
Query: 301 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 1093
Query: 361 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 1153
Query: 421 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 1213
Query: 481 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 1273
Query: 541 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 1333
Query: 601 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 1393
Query: 661 tgggcaattctttaagcatcaacaaaagacccacaacctac 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 tgggcaattctttaagcatcaacaaaagacccacaacctac 1434
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence
Length = 222121
Score = 1382 bits (697), Expect = 0.0
Identities = 700/701 (99%)
Strand = Plus / Minus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92393 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 92334
Query: 61 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92333 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 92274
Query: 121 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92273 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 92214
Query: 181 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92213 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 92154
Query: 241 attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92153 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 92094
Query: 301 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92093 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 92034
Query: 361 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92033 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 91974
Query: 421 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91973 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 91914
Query: 481 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91913 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 91854
Query: 541 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91853 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 91794
Query: 601 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91793 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 91734
Query: 661 tgggcaattctttaagcatcaacaaaagacccacaacctac 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 91733 tgggcaattctttaagcatcaacaaaagacccacaacctac 91693
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 18 gcttctgtgcctgctgctcatagc 41
|||||| |||||||||||||||||
Sbjct: 22923 gcttctttgcctgctgctcatagc 22900
>emb|AL607034.16| Mouse DNA sequence from clone RP23-303K9 on chromosome 11, complete
sequence [Mus musculus]
Length = 143148
Score = 1382 bits (697), Expect = 0.0
Identities = 700/701 (99%)
Strand = Plus / Minus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142719 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 142660
Query: 61 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142659 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 142600
Query: 121 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142599 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 142540
Query: 181 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142539 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 142480
Query: 241 attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142479 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 142420
Query: 301 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142419 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 142360
Query: 361 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142359 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 142300
Query: 421 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142299 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 142240
Query: 481 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142239 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 142180
Query: 541 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142179 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 142120
Query: 601 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142119 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 142060
Query: 661 tgggcaattctttaagcatcaacaaaagacccacaacctac 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 142059 tgggcaattctttaagcatcaacaaaagacccacaacctac 142019
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 18 gcttctgtgcctgctgctcatagc 41
|||||| |||||||||||||||||
Sbjct: 73250 gcttctttgcctgctgctcatagc 73227
>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
clone 149H13 of library Caltech CITB-BAC from chromosome
11 of Mus musculus (mouse)
Length = 240425
Score = 1382 bits (697), Expect = 0.0
Identities = 700/701 (99%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81957 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 82016
Query: 61 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82017 gtgtgggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtccct 82076
Query: 121 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82077 tctctgggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgct 82136
Query: 181 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137 ggctttgccaaagtaggacaattaaaagaaggacaagaagatacttatagtccaatgata 82196
Query: 241 attctagaacttgaacctcattcccttaggactcatttgtggaaacaagatagttcttgc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197 attctagaacttgaacctgattcccttaggactcatttgtggaaacaagatagttcttgc 82256
Query: 301 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82257 cttctgtggtgatggggtcctaggtcatcaaataggagcctgggatggttctcaggtaaa 82316
Query: 361 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82317 agagggagggagaagaggcccaatgtctggtgggtgctttatccagcccaatttccagag 82376
Query: 421 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82377 acagtggttatgtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggag 82436
Query: 481 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82437 actcataaccagtgtctccttattctaaagaactgtggcattataataatgctttctagt 82496
Query: 541 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82497 gacacccattattgtcatcagctctttttgactctattgactggcatataacccaaccca 82556
Query: 601 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82557 ttcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactaggg 82616
Query: 661 tgggcaattctttaagcatcaacaaaagacccacaacctac 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 82617 tgggcaattctttaagcatcaacaaaagacccacaacctac 82657
Score = 40.1 bits (20), Expect = 2.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 gcttctgtgcctgctgctcatagc 41
|||||| |||||||||||||||||
Sbjct: 151407 gcttctttgcctgctgctcatagc 151430
>gb|AF154245.1|AF154245 Rattus norvegicus chemotactic protein-3 gene, complete cds
Length = 2416
Score = 222 bits (112), Expect = 4e-55
Identities = 237/276 (85%), Gaps = 7/276 (2%)
Strand = Plus / Plus
Query: 318 tcctaggtcatcaaataggagcctgggatg-----gttctcaggtaaaagagggagggag 372
|||| |||||||||||||| |||||||||| ||||||||||| ||||| |||| |
Sbjct: 981 tcctgggtcatcaaataggggcctgggatgaaggtgttctcaggtagaagagaaaggggg 1040
Query: 373 aa-gaggcccaatgtctggtgggtgctttatccagcccaatttccagagacagtggttat 431
|| |||| |||| ||| ||||| | |||||||||| ||||||||| || |||||||| |
Sbjct: 1041 aaagaggtccaagatctagtgggag-tttatccagctcaatttccatagtcagtggttct 1099
Query: 432 gtagaggctgtgtcacaactaaacactatttcttttatcctaaaaggagactcataacca 491
||||||| |||||||||||| |||| ||||||||||||| |||||| ||||||||||||
Sbjct: 1100 atagaggccgtgtcacaactagacaccatttcttttatccaaaaaggggactcataacca 1159
Query: 492 gtgtctccttattctaaagaactgtggcattataataatgctttctagtgacacccatta 551
||||||||||||||||| |||||| ||||||||| || || | || ||||||||||||
Sbjct: 1160 gtgtctccttattctaaggaactggggcattatactagtgttctccagtgacacccatgg 1219
Query: 552 ttgtcatcagctctttttgactctattgactggcat 587
||||||||||||||| ||| ||||||||||||||||
Sbjct: 1220 ttgtcatcagctcttcttgcctctattgactggcat 1255
Score = 161 bits (81), Expect = 1e-36
Identities = 175/205 (85%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 6 gatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaagtgtg 65
|||||||||| |||||||||| ||||||||| ||| |||||||||| | | || |||||
Sbjct: 658 gatctctgccgcgcttctgtgtgtgctgctcacagctgctgctttcaccgtgcacgtgtg 717
Query: 66 ggcccaaccaggtgagactcaccctgcctcctgtttcccagagcatgctgtcccttctct 125
||||||||||||||||||| |||||| || ||||||||| |||||||| ||||||||
Sbjct: 718 ggcccaaccaggtgagacttgccctgctgtctttttcccagaacatgctgtaccttctct 777
Query: 126 gggacatttcatagaaaattacagaacaaggtttacccatagtctcacatttgctggctt 185
||||| ||| | || ||||||||||||| |||||||||||||||| || |||||||
Sbjct: 778 gggacgttttgtggacctttacagaacaaggcttacccatagtctcac-cttcctggctt 836
Query: 186 tgccaaagtaggacaattaaaagaa 210
|||||||||| | ||||||||||||
Sbjct: 837 tgccaaagtaaggcaattaaaagaa 861
Score = 50.1 bits (25), Expect = 0.003
Identities = 59/69 (85%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 599 cattcaagtgagaaagaattggggaacataataaaaaggagaggagagacattaaactag 658
||||||||||||||||||||| ||| |||| |||| ||| ||||||||||| ||||
Sbjct: 1253 cattcaagtgagaaagaattgagga-catattaaa-----gagtagagacattaatctag 1306
Query: 659 ggtgggcaa 667
|||||||||
Sbjct: 1307 ggtgggcaa 1315
Score = 40.1 bits (20), Expect = 2.9
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 262 tcccttaggactcatttgtggaaacaagatagttcttgcc 301
||||||||| |||||| |||| |||||||||||| ||||
Sbjct: 913 tcccttaggtttcatttttggagacaagatagttcctgcc 952
>ref|NM_013654.1| Mus musculus small inducible cytokine A7 (Scya7), mRNA
Length = 808
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 112
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 113 gtgtgggcccaaccag 128
>gb|AF128194.1|AF128194 Mus musculus strain SJL/J small inducible cytokine A7 (ScyA7) mRNA,
complete cds
Length = 358
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 97
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 98 gtgtgggcccaaccag 113
>gb|AF128193.1|AF128193 Mus musculus strain B10.S/J small inducible cytokine A7 (ScyA7)
mRNA, complete cds
Length = 358
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 97
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 98 gtgtgggcccaaccag 113
>gb|S71251.1|S71251 monocyte chemotactic protein-3 [mice, macrophage cell line WEHI-3,
mRNA, 808 nt]
Length = 808
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 112
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 113 gtgtgggcccaaccag 128
>emb|Z12297.1|MMINTRCRN M.musculus mRNA for intercrine
Length = 746
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 80
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 81 gtgtgggcccaaccag 96
>gb|L04694.1|MUSCYTOKIN Mouse cytokine (fic) mRNA, complete cds
Length = 593
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 atgaggatctctgccacgcttctgtgcctgctgctcatagccgctgctttcagcatccaa 94
Query: 61 gtgtgggcccaaccag 76
||||||||||||||||
Sbjct: 95 gtgtgggcccaaccag 110
>gb|M57440.1|RABMCP1 Rabbit monocyte chemoattractant protein-1 (MCP-1) mRNA, complete
cds
Length = 607
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
||||||| ||||||||||||||||||||||||||
Sbjct: 23 tctctgcaacgcttctgtgcctgctgctcatagc 56
>ref|XM_038982.1| Homo sapiens small inducible cytokine A2 (monocyte chemotactic
protein 1) (SCYA2), mRNA
Length = 725
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94
>ref|NM_002982.1| Homo sapiens small inducible cytokine A2 (monocyte chemotactic
protein 1) (SCYA2), mRNA
Length = 739
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94
>gb|BC009716.1|BC009716 Homo sapiens, small inducible cytokine A2 (monocyte chemotactic
protein 1, homologous to mouse Sig-je), clone MGC:9434
IMAGE:3901489, mRNA, complete cds
Length = 743
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 64 tctctgccgcccttctgtgcctgctgctcatagc 97
>gb|AC005549.1|AC005549 Homo sapiens chromosome 17, clone hRPK.215_E_13, complete sequence
Length = 147416
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 61410 tctctgccgcccttctgtgcctgctgctcatagc 61377
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 19 cttctgtgcctgctgctcatagccgctgctttcagc 54
|||||||| |||||||||| ||| ||||||||||||
Sbjct: 46458 cttctgtgtctgctgctcacagcagctgctttcagc 46423
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 19 cttctgtgcctgctgctcatagccgctgctttcagc 54
|||||||| |||||||||||||| ||||| ||||||
Sbjct: 30940 cttctgtggctgctgctcatagcagctgccttcagc 30905
>emb|Y18933.1|HSY18933 Homo sapiens MCP-1 gene and enhancer region
Length = 11793
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 7617 tctctgccgcccttctgtgcctgctgctcatagc 7650
>gb|S69738.1|S69738 MCP-1=monocyte chemotactic protein [human, aortic endothelial
cells, mRNA, 661 nt]
Length = 661
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 39 tctctgccgcccttctgtgcctgctgctcatagc 72
>gb|S71513.1|S71513 monocyte chemoattractant protein-1 [human, mRNA, 739 nt]
Length = 739
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94
>emb|X14768.1|HSMCP1 H.sapiens mRNA for monocyte chemoattractant protein 1 (MCP-1)
Length = 725
Score = 52.0 bits (26), Expect = 8e-04
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tctctgccacgcttctgtgcctgctgctcatagc 41
|||||||| | |||||||||||||||||||||||
Sbjct: 61 tctctgccgcccttctgtgcctgctgctcatagc 94
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: Mar 29, 2002 12:33 AM
Number of letters in database: 867,074,787
Number of sequences in database: 1,192,858
Lambda K H
1.37 0.711 5.30e-313
Gapped
Lambda K H
1.37 0.711 5.30e-313
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,390,429
Number of Sequences: 1192858
Number of extensions: 2390429
Number of successful extensions: 51390
Number of sequences better than 10.0: 75
length of query: 701
length of database: 5,162,042,083
effective HSP length: 21
effective length of query: 680
effective length of database: 5,136,992,065
effective search space: 3493154604200
effective search space used: 3493154604200
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
--------------070307020303060002070505--