[Bioperl-l] DB::GenBank.pm
Mick Watson
michaelwatson@paradigm-therapeutics.co.uk
Fri, 12 Apr 2002 15:28:15 +0100
Hi
I am using Bio::DB::GenBank to fetch sequence objects from the NCBI.
The purpose of this is to find out information regarding the clone,
namely information in the Clone Id field E.g.:
Clone Id: IMAGE:5207461 (5')
I am having two problems.
Fristly, I wish to fetch by gi number. Accession BI768930 is gi
15760508, but:
$seq = $gb->get_Seq_by_id("15760508");
doesn't work.... is there a way to fetch by gi number?
Secondly, a call to get_Seq_by_acc and get_seq_by_id will return a
RichSeq object.... what method calls do I have to make on this object in
order to obtain the Clone Id field above?
Thank you very much for your time
Mick