[Bioperl-l] RootI again

[Jason Stajich]

On Mon, 29 Apr 2002, Chris Mungall wrote:

> Yes, I know this was discussed last month...
>
> It seems it'll be a while before this is sorted out - but in the meantime
> can we get rid of the deprecation warnings in RootI?
>
> I've just changed one of our in house classes to inherit off of
> Bio::SeqFeatureI ( < RangeI < RootI), and suddenly my stderr goes crazy
>
I think the correct behavior is:

@ISA = qw(Bio::Root::Root Bio::SeqFeatureI);

> Can I fix and commit RootI so that it only carps, say, if
> $ENV{BIOPERL_DEVELOPER} is set?
>
> I have to say the intricacies of the RootI problem are beyond me, but this
> should be a harmless change.
>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu