[Bioperl-l] Bug in get_Seq_by_acc() function?
Hong (Henry) Lu
hlu@epigene.com
Mon, 15 Apr 2002 15:49:50 -0400 (EDT)
I used get_Seq_by_acc() function to obtain genbank sequence in my
intranet web application. However, I encountered problem as below:
Accession "L12691" will not work properly for the function. The Genbank
sequence I obtained is AC090389 using fuction
$gbobj->get_Seq_by_acc("L12691");
Under NCBI web page, If I type in "L12691", I will get both
AC090389 L12691. "AC090389" is really unrelated
sequence to "L12691" thought it has word "L12691" in its comment field.
I had always assumed that I could obtain an uniq sequence using
get_Seq_by_acc() function. Now I have to reconsider the issue. How can
get_Seq_by_acc() function report an unrelated sequence?
--
Hong (Henry) Lu
Bioinformatics Scientist
Epigenesis Pharmaceuticals
http://www.EpigenesisPharmaceuticals.com/