[Bioperl-l] xml standard for sequences

[Lincoln Stein]

There are a number of standards; none has swept the others yet, although this 
will probably happen in time:

	GAME	- berkeley annotation format
	BSML	- from visual genomics
	AGAVE	- from doubletwist, now defunct
	DAS	- for simple annotations

The departure of BioXML is lamentable.  We really need to bring it back!  Any 
volunteers?

Lincoln

On Tuesday 16 April 2002 07:45, Gila Lithwick wrote:
> Hello,
> I want to start working with XML, and would like to use the standard
> dtds for sequence data (if they exist).
> I noticed that bioxml no longer exists, that EBI creates XML files for
> protein data, that ncbi has a parser for its asn files, and that a
> couple companies have there own dtds (Bioml, bsml).
> Is there a dtd that's supposed to be the standard for sequence (dna and
> protein) data?
> (And what happened to bioxml?)
> Thanks,
> Gila.
>
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