[Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]

[Simon Whitaker]

On Mon, 15 Apr 2002 13:01:14 +0100 I wrote:

> translateToUniqueAlleles() - no arguments. Translates repeat length data
> into unique alleles. Returns reference to 2-dimensional array of results
> on success, sets error message and returns 0 on failure.

Forgot to mention - this method is designed to render the data usable in
MLST analysis or LE analysis. Presumably that makes more sense to you
all than it does to me. :-) For example:

INPUT:

lgtC,lex2A,lic1,lic2,lic3,strain
15,20,33,30,29,1231
15,20,34,30,29,1232
43,26,39,22,36,1209
41,25,39,22,36,1207

OUTPUT:

lgtC lex2A lic1 lic2 lic3 strain
1,1,1,1,1,1231
1,1,2,1,1,1232
2,2,3,2,2,1209
3,3,3,2,2,1207

All the best,

Simon

-- 
Simon Whitaker
http://netcetera.org/