2001-November Archives by Thread

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Starting: Thu Nov 1 05:35:44 2001
Ending: Fri Nov 30 23:40:55 2001
Messages: 207

• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Hilmar Lapp
• [Bioperl-l] operator overloading: Seq->subseq & Seq->trim   Hilmar Lapp
• [Bioperl-l] New Annotation interfaces!   Ewan Birney
  • [Bioperl-l] New Annotation interfaces!   Hilmar Lapp
  • [Bioperl-l] New Annotation interfaces!   Mark Wilkinson
  • [Bioperl-l] parsing clone/contig coordinates from genbank   Chris Mungall
    • [Bioperl-l] parsing clone/contig coordinates from genbank   Ewan Birney
      • [Bioperl-l] parsing clone/contig coordinates from genbank   Hilmar Lapp
      • [Bioperl-l] parsing clone/contig coordinates from genbank   Chris Mungall
• [Bioperl-l] important change for Bio::SeqIO::GenBank   Heikki Lehvaslaiho
• [Bioperl-l] Getting refseq (contigs) from Genbank   Jason Eric Stajich
• AW: [Bioperl-l] New Annotation interfaces!   =?iso-8859-1?Q?Murat_=DCnalan?=
• [Bioperl-l] want to bring tools together to help small labs   Fernan Aguero
  • [Bioperl-l] want to bring tools together to help small labs   Jason Eric Stajich
    • [Bioperl-l] Mark & Dave proudly announce: Genquire released as OSS!   Mark Wilkinson
    • [Bioperl-l] want to bring tools together to help small labs   Elia Stupka
• [Bioperl-l] want to bring tools together to help small labs   Osborne, Brian
  • [Bioperl-l] want to bring tools together to help small labs   Ewan Birney
    • [Bioperl-l] bioperl-db release   Jason Eric Stajich
      • [Bioperl-l] Re: bioperl-db release   Ewan Birney
    • [Bioperl-l] want to bring tools together to help small labs   Elia Stupka
  • [Bioperl-l] want to bring tools together to help small labs   Fernan Aguero
    • [Bioperl-l] want to bring tools together to help small labs   Elia Stupka
  • [Bioperl-l] want to bring tools together to help small labs   Elia Stupka
• [Bioperl-l] Bioperl::Windows::installation ??   Viren Konde
  • [Bioperl-l] Bioperl::Windows::installation ??   chris dagdigian
• [Bioperl-l] Bioperl suitable for Unigene parsing?   Hong (Henry) Lu
  • [Bioperl-l] Bioperl suitable for Unigene parsing?   Elia Stupka
• [Bioperl-l] installation problem   Yi Xing
• [Bioperl-l] 0.7.2 candidate   Jason Eric Stajich
  • [Bioperl-l] 0.7.2 candidate   Heikki Lehvaslaiho
    • [Bioperl-l] 0.7.2 candidate   Jason Eric Stajich
• [Bioperl-l] Computational biology course members looking for project ideas   chris dagdigian
• [Bioperl-l] Parsing Blast output for nohit sequences   Marc Logghe
• [Bioperl-l] Genquire   Elia Stupka
  • [Bioperl-l] Genquire   Ewan Birney
    • [Bioperl-l] Genquire   Elia Stupka
      • [Bioperl-l] Genquire   David Block
    • [Bioperl-l] Genquire   David Block
      • [Bioperl-l] Genquire   Elia Stupka
      • [Bioperl-l] Genquire   David Block
      • [Bioperl-l] Computational Neuroscience NSF/NIH initiaite   Jonathan Epstein
• [Bioperl-l] AlkahEST (was: want to bring tools together to help small labs)   T.D. Houfek
• [Bioperl-l] Assembly package and phredPhrap tools   Robson Francisco de Souza
  • [Bioperl-l] Re: Assembly package and phredPhrap tools   Chad Matsalla
• [Bioperl-l] installation problem   Osborne, Brian
• [Bioperl-l] AlkahEST (was: want to bring tools together to help small labs)   T.D. Houfek
• [Bioperl-l] Searchable mailing list archives ?   Kris Boulez
  • [Bioperl-l] Searchable mailing list archives ?   chris dagdigian
• [Bioperl-l] Number of hits   Ross Gibbs
  • [Bioperl-l] Number of hits   Jonathan Epstein
• [Bioperl-l] bioperl-db is a one way ticket?   Alex Zelensky
  • [Bioperl-l] bioperl-db is a one way ticket?   Ewan Birney
• [Bioperl-l] mail problem   Elia Stupka
• [Bioperl-l] installation problem   Osborne, Brian
  • [Bioperl-l] installation problem   Elia Stupka
• [Bioperl-l] Parsing Blast output for nohit sequences   Chervitz, Steve
• [Bioperl-l] Account for Alex   Elia Stupka
• [Bioperl-l] Troubles installing bioperl 0.7.1 on Solaris   Keith Neil
• [Bioperl-l] Help using bioperl-db   gert thijs
  • [Bioperl-l] Help using bioperl-db   Ewan Birney
  • [Bioperl-l] Help using bioperl-db   Elia Stupka
• [Bioperl-l] Ensembl web site branch in bioperl   Ewan Birney
  • [Bioperl-l] Ensembl web site branch in bioperl   Hilmar Lapp
    • [Bioperl-l] Ensembl web site branch in bioperl   Ewan Birney
• [Bioperl-l] DBSOURCE in a new GenBank record   Wang, Kai
• [Bioperl-l] Canada   olelem@go.com
• [Bioperl-l] pb with remote method in Bio::Tools::Blast   Catherine Letondal
  • [Bioperl-l] pb with remote method in Bio::Tools::Blast   Elia Stupka
    • [Bioperl-l] pb with remote method in Bio::Tools::Blast   Catherine Letondal
• [Bioperl-l] ActivePerl, Bioperl and Modules under Windows   Viren Konde
• [Bioperl-l] help with getgenbank.pl script   Pedro A Reche Gallardo
  • [Bioperl-l] help with getgenbank.pl script   Heikki Lehvaslaiho
• [Bioperl-l] package strategy, 0.7.2 release   Jason Eric Stajich
• [Bioperl-l] BPbl2seq   David Martin
  • [Bioperl-l] BPbl2seq   Jason Eric Stajich
  • [Bioperl-l] BPbl2seq   Jason Eric Stajich
• [Bioperl-l] Parsing PDB entries in BioPerl   Kris Boulez
  • [Bioperl-l] Parsing PDB entries in BioPerl   Sri Krishna S.
    • [Bioperl-l] Parsing PDB entries in BioPerl   Kris Boulez
      • [Bioperl-l] Parsing PDB entries in BioPerl   Sri Krishna S.
      • [Bioperl-l] BLOCKS search parser?   Ann Loraine
      • [Bioperl-l] bioperl help   nabula easter
      • [Bioperl-l] bioperl help   David Block
      • [Bioperl-l] revcom bug?   Tony Cox
      • [Bioperl-l] revcom bug?   Heikki Lehvaslaiho
      • [Bioperl-l] Windows "index" installation failure   Jonathan Epstein
      • [Bioperl-l] Windows "index" installation failure   Jason Eric Stajich
  • [Bioperl-l] Parsing PDB entries in BioPerl   Jonathan Epstein
    • [Bioperl-l] Parsing PDB entries in BioPerl   David Block
  • [Bioperl-l] Parsing PDB entries in BioPerl   Ann Loraine
• [Bioperl-l] Parsing PDB entries in BioPerl   Kris Boulez
  • [Bioperl-l] Parsing PDB entries in BioPerl   Ewan Birney
• [Bioperl-l] Ensembl specific 07 branch   Ewan Birney
• [Bioperl-l] Scribe Consulting :: Translation and Localization Solutions   Scribe Consulting
• [Bioperl-l] Trying to get a mysql DB from genbank flat files   Raphael LaFrance
  • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Elia Stupka
• [Bioperl-l] Building Databases   Mike Myers
• [Bioperl-l] Bio::SeqIO::bsml.pm   Charles Tilford
  • [Bioperl-l] Re: Bio::SeqIO::bsml.pm   Ewan Birney
• [Bioperl-l] Trying to get a mysql DB from genbank flat files   Wilfred Li, Ph.D.
• [Bioperl-l] Trying to get a mysql DB from genbank flat files   Osborne, Brian
  • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Raphael LaFrance
    • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Raphael LaFrance
      • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Raphael LaFrance
  • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Elia Stupka
    • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Heikki Lehvaslaiho
      • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Raphael LaFrance
      • [Bioperl-l] Trying to get a mysql DB from genbank flat files   Nirav Merchant
      • [Bioperl-l] Trying to get a mysql DB from genbank flatfiles   Raphael LaFrance
      • [Bioperl-l] Trying to get a mysql DB from genbank flatfiles   Jason Eric Stajich
• [Bioperl-l] Basic Questions   Amit Kaushik
• [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
  • [Bioperl-l] First commit of Bio::Structure objects   Chris Mungall
    • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
      • [Bioperl-l] First commit of Bio::Structure objects   Chris Mungall
      • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
      • [Bioperl-l] First commit of Bio::Structure objects   ed
      • [Bioperl-l] First commit of Bio::Structure objects   Elia Stupka
      • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
      • [Bioperl-l] First commit of Bio::Structure objects   Elia Stupka
      • [Bioperl-l] First commit of Bio::Structure objects   Ewan Birney
      • [Bioperl-l] First commit of Bio::Structure objects   Ewan Birney
      • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
      • [Bioperl-l] First commit of Bio::Structure objects   Chris Mungall
      • [Bioperl-l] First commit of Bio::Structure objects   Ewan Birney
• [Bioperl-l] fine   Elia Stupka
  • [Bioperl-l] fine   Raphael LaFrance
• [Bioperl-l] Re: ensembl-compara going a bit further?   Elia Stupka
  • [Bioperl-l] Re: ensembl-compara going a bit further?   Abel Ureta-Vidal
    • [Bioperl-l] Re: ensembl-compara going a bit further?   Elia Stupka
      • [Bioperl-l] Re: ensembl-compara going a bit further?   Abel Ureta-Vidal
• [Bioperl-l] Release: bioperl 0.7.2 and bioperl-db 0.1   Jason Eric Stajich
  • [Bioperl-l] bioperl-db 0.1   Dennis V. Lavrov
• [Bioperl-l] Re: ensembl-compara going a bit further?   David Block
• [Bioperl-l] Bio::RootI   Lincoln Stein
  • [Bioperl-l] Bio::RootI   Elia Stupka
    • [Bioperl-l] Bio::RootI   Ewan Birney
      • [Bioperl-l] Bio::RootI   Lincoln Stein
      • [Bioperl-l] Bio::RootI   Jason Eric Stajich
      • [Bioperl-l] Bio::RootI   Hilmar Lapp
      • [Bioperl-l] Bio::RootI   Ewan Birney
  • [Bioperl-l] Bio::RootI   Ewan Birney
• [Bioperl-l] Bio::Graphics/Bio::DB::GFF sequence browser released   Lincoln Stein
• [Bioperl-l] Re: BPlite Coordinates/Strandedness w/ WUBLAST (PR#1032)   Hilmar Lapp
• [Bioperl-l] bioperl bugs #1033,#1032   Jason Eric Stajich
• [Bioperl-l] test failing on 0.7.2   Fernan Aguero
• [Bioperl-l] 0.7.2 and bioperl-db uploaded to CPAN   Ewan Birney
• [Bioperl-l] Bio::RootI   Lincoln Stein
• [Bioperl-l] First commit of Bio::Structure objects   Corradi, John
  • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
    • [Bioperl-l] First commit of Bio::Structure objects   Elia Stupka
      • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
      • [Bioperl-l] First commit of Bio::Structure objects   Elia Stupka
    • [Bioperl-l] First commit of Bio::Structure objects   Ewan Birney
      • [Bioperl-l] First commit of Bio::Structure objects   Kris Boulez
• [Bioperl-l] FASTAParser   Spring Laugh
  • [Bioperl-l] FASTAParser   Paul Gordon
• [Bioperl-l] Lincoln=Wow   Jason Eric Stajich
• [Bioperl-l] bug in SeqIO.pm   Wang, Kai
  • [Bioperl-l] bug in SeqIO.pm   Jason Eric Stajich
• [Bioperl-l] Gadfly in gbrowse (Bio::Graphics + Bio::DB::GFF)   Lincoln Stein
• [Bioperl-l] Re: Gadfly in gbrowse (Bio::Graphics + Bio::DB::GFF)   Chris Mungall
• [Bioperl-l] Linkage Reports   Tracey Weiler
  • [Bioperl-l] Bplite   nabula easter
    • [Bioperl-l] Bplite   Jason Eric Stajich
• [Bioperl-l] blast database paths and Blast.pm parsing   Kim Brugger
  • [Bioperl-l] blast database paths and Blast.pm parsing   Hilmar Lapp
• [Bioperl-l] BPlite bug: software or documentation bug?   Fernan Aguero
  • [Bioperl-l] BPlite bug: software or documentation bug?   Hilmar Lapp
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1037   Jason Eric Stajich
• [Bioperl-l] Does pSW support DNA sequence?   Kun Zhang
  • [Bioperl-l] Does pSW support DNA sequence?   Ewan Birney
• [Bioperl-l] OBF members; 30% discount to the O'Reilly Bioinformatics Technology Conference   chris dagdigian
• [Bioperl-l] New version of Bio::Structure objects   Kris Boulez
• [Bioperl-l] Map modules and IO   Chad Matsalla
  • [Bioperl-l] Map modules and IO   Jason Eric Stajich
    • [Bioperl-l] Map modules and IO   Chad Matsalla
• [Bioperl-l] help!!! installation problem   zhenyisong
• [Bioperl-l] get/set returns and arrays   Chad Matsalla
  • [Bioperl-l] get/set returns and arrays   David Block
• [Bioperl-l] blast database paths and Blast.pm parsing   Chervitz, Steve
• [Bioperl-l] in desperate: please help me with this installation problem   zhenyisong
  • [Bioperl-l] in desperate: please help me with this installation problem   Hilmar Lapp
• [Bioperl-l] PDB parser   Kris Boulez
• [Bioperl-l] PDB parser   Kris Boulez
• [Bioperl-l] catechism   Karger, Amir
• [Bioperl-l] bioperl-db branch   Jason Eric Stajich
  • [Bioperl-l] Referencing BioPerl   Mark Wilkinson
    • [Bioperl-l] Referencing BioPerl   Mark Wilkinson
  • [Bioperl-l] bioperl-db branch   Elia Stupka
    • [Bioperl-l] bioperl-db branch   Jason Eric Stajich
  • [Bioperl-l] bioperl-db branch   Ewan Birney
• [Bioperl-l] prototype objects for mapping and MapIO   Chad Matsalla
• [Bioperl-l] Problems Bio::DB::Genbank   Lluis Armengol - Linux
  • [Bioperl-l] Problems Bio::DB::Genbank   Malcolm Cook
• [Bioperl-l] Referencing BioPerl   Mark Wilkinson
  • [Bioperl-l] Referencing BioPerl   Hilmar Lapp
• [Bioperl-l] Re: [Biojava-l] about AGAVE   Brian King
• [Bioperl-l] PDB parser   Marc Baaden
  • [Bioperl-l] PDB parser   Kris Boulez
• [Bioperl-l] Pise/bioperl   Catherine Letondal
• [Bioperl-l] Re: more on Genscan.pm   Hilmar Lapp
• [Bioperl-l] RE: more on Genscan.pm   Osborne, Brian
• [Bioperl-l] New modules for STRIDE and DSSP output   Jason Eric Stajich
• [Bioperl-l] Help on retrieving NT contigs with Bio::DB::GenBank.   Kun Zhang
  • [Bioperl-l] Help on retrieving NT contigs with Bio::DB::GenBank.   Jason Eric Stajich

Last message date: Fri Nov 30 23:40:55 2001
Archived on: Fri Nov 30 18:36:03 2001

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