[Bioperl-l] Bplite

[Jason Eric Stajich]

a) Case counts!
line should read
 use Bio::Tools::BPlite
instead of
 use Bio::Tools::Bplite

b) You aren't actually calling print anywhere in your script so you won't get
   any results.  The code in the SYNOPSIS is meant to be an example of how
   the API is used, but you will need to build up a script so that it
   prints the data in the way you expect to see it.

c) You can either specify the input from STDIN by running the script like:
% perl mybplitescript.pl < atop.txt

 or change your script so that it reads
my $report = new Bio::Tools::BPlite(-file => "atop.txt");

Best of luck.

On Sat, 24 Nov 2001, nabula easter wrote:

> Dear list,
> I have a blast report (atop1.txt) and i am trying to
> parse this blast report for sequence name, its high
> E-value. for this i tried Bplite module.
>
> As per bioperl docs, i used this following script, but
> unfortunately i did not get any result. i know there
> is a mistake in this, but i am unable to find that.
> Please help me.
> my blast report: atop1.txt
> Script:
>
> use Bio::Tools::Bplite;
> $report = new Bplite (-fh=>\*STDIN);
> $report->query;
> while (my $sbjct = $report->nextSbjct){
> $sbjct->name;
> while (my $hsp = $sbjct->nextHS) {$hsp->score;}
> }
>
>
> thank you
> NE
>
> __________________________________________________
> Do You Yahoo!?
> Yahoo! GeoCities - quick and easy web site hosting, just $8.95/month.
> http://geocities.yahoo.com/ps/info1
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu