[Bioperl-l] test failing on 0.7.2
Fernan Aguero
fernan@iib.unsam.edu.ar
Mon, 19 Nov 2001 11:23:34 -0300
t/StandAloneBlast...ok 2/8[blastall] WARNING: Could not find index files for database /ecoli.nt
[blastall] WARNING: Test Could not find index files for database /ecoli.nt
-------------------- EXCEPTION --------------------
MSG: blastall call crashed: 256 /usr/local/bin/blastall -p blastn -d /ecoli.nt -i t/test.txt -o blastreport.out
STACK Bio::Tools::Run::StandAloneBlast::_runblast blib/lib/Bio/Tools/Run/StandAloneBlast.pm:594
STACK Bio::Tools::Run::StandAloneBlast::_generic_local_blast blib/lib/Bio/Tools/Run/StandAloneBlast.pm:566
STACK Bio::Tools::Run::StandAloneBlast::blastall blib/lib/Bio/Tools/Run/StandAloneBlast.pm:454
STACK toplevel t/StandAloneBlast.t:70
-------------------------------------------
t/StandAloneBlast...dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 3-8
Failed 6/8 tests, 25.00% okay
Is the test looking for an ecoli.nt under / (the filesystem's root)?
--
| F e r n a n A g u e r o | B i o i n f o r m a t i c s |
| fernan@iib.unsam.edu.ar | genoma.unsam.edu.ar |