[Bioperl-l] in desperate: please help me with this installation problem

[zhenyisong]

I have to send this letter again.I remember someone has asked the same question before, but  I cannot find them in web archive.

feel dismayed when i installed bio-perl
platform: RH7.2 bioperl bioperl-0.7.2

When I instlall bioperl as root,make test:

t/DB................ok 39/47Warning: Couldn't connect to Genbank with Bio::DB::GenBank.pm!  (why??)
t/DB................ok, 8/47 skipped: unknown reason 
t/SearchDist........ok, 3/3 skipped: unknown reason 

t/StandAloneBlast...ok 2/8[blastall] WARNING: Could not find index files for database /usr/local/bin/data/ecoli.nt
[blastall] WARNING: Test: Could not find index files for database /usr/local/bin/data/ecoli.nt
-------------------- EXCEPTION --------------------
MSG: blastall call crashed: 256 /usr/local/bin/blastall -p  blastn  -d  /usr/local/bin/data/ecoli.nt  -i  t/test.txt  -o  blastreport.out 

STACK Bio::Tools::Run::StandAloneBlast::_runblast blib/lib/Bio/Tools/Run/StandAloneBlast.pm:594
STACK Bio::Tools::Run::StandAloneBlast::_generic_local_blast blib/lib/Bio/Tools/Run/StandAloneBlast.pm:566
STACK Bio::Tools::Run::StandAloneBlast::blastall blib/lib/Bio/Tools/Run/StandAloneBlast.pm:454
STACK toplevel t/StandAloneBlast.t:70
-------------------------------------------
t/StandAloneBlast...dubious                                                  
        Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 3-8
        Failed 6/8 tests, 25.00% okay
Failed 1/60 test scripts, 98.33% okay. 6/1016 subtests failed, 99.41% okay.
make: *** [test_dynamic] Error 29

please tell me why.

thanx in advance 


--------------------------------------------

Zhen Yisong(Ph.D Candidate)
Bioinformatics Center
Sino-German Laboratory for Molecular Medicine
Fu Wai Cardiovascular Hospital
Peking Union Medical College
167 Road Beilishi
100037  Beijing
P.R.China

Tel:86-10-68331761
Fax:86-10-68331730
E-mail:zhenyisong@sglab.org
Tsinghua:86-10-62781436
Homepage:http://www.sglab.org


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