2002-February Archives by Thread

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Starting: Fri Feb 1 09:15:52 2002
Ending: Thu Feb 28 02:07:40 2002
Messages: 205

• [Bioperl-l] A second ensembl issue rears its head . . .   James Smith
• [Bioperl-l] bioperl-db documentation error   Brian Osborne
  • [Bioperl-l] bioperl-db documentation error   Jason Stajich
• [Bioperl-l] Installation problems: solaris   Denise Abbott
  • [Bioperl-l] Installation problems: solaris   Jason Stajich
• [Bioperl-l] Bio::TreeIO   Ardell, David
  • [Bioperl-l] Bio::TreeIO   Jason Stajich
    • [Bioperl-l] Bio::TreeIO   David Ardell
• [Bioperl-l] Genetic Analysis Modules   Steve Mathias
• [Bioperl-l] question regarding entrez   Xiaowu Gai
  • [Bioperl-l] question regarding entrez   Jonathan Epstein
• [Bioperl-l] Jason and Ewan's TODO list   Peter Schattner
• [Bioperl-l] re: blast parsing   Peter Schattner
• [Bioperl-l] (no subject) (fwd)   Jason Stajich
• [Bioperl-l] Bio::Graphics   Lincoln Stein
  • [Bioperl-l] Bio::Graphics   Heikki Lehvaslaiho
    • [Bioperl-l] Bio::Graphics   Lincoln Stein
      • [Bioperl-l] Bio::Graphics   Jason Stajich
      • [Bioperl-l] Bio::Graphics   Ewan Birney
      • [Bioperl-l] Bio::Graphics   Lincoln Stein
      • [Bioperl-l] Bio::Graphics   Ewan Birney
      • [Bioperl-l] Bio::Graphics   Lincoln Stein
      • [Bioperl-l] Bio::Graphics   Leonardo Marino-Ramirez
      • [Bioperl-l] Bio::Graphics   Mark Wilkinson
• [Bioperl-l] SeqIO on two files   Michal Kurowski
• [Bioperl-l] Boulder   Lincoln Stein
• [Bioperl-l] internal code review of Bio::Search   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1077 (fwd)   Jason Stajich
• [Bioperl-l] help for installation bioperl Reahat linux   Yong Jiang
  • [Bioperl-l] help for installation bioperl Reahat linux   Jason Stajich
• [Bioperl-l] Request   Vijay Kaza
• [Bioperl-l] Flash Website Builder   Mark
• [Bioperl-l] oracle and bioperl/ensembl   Tania Oh
  • [Bioperl-l] oracle and bioperl/ensembl   Lincoln Stein
  • [Bioperl-l] Re: oracle and bioperl/ensembl   Elia Stupka
• [Bioperl-l] Substitution matrix format for Bio::Tools::pSW (Wise2)   Benjamin Berman
  • [Bioperl-l] Substitution matrix format for Bio::Tools::pSW (Wise2)   Ewan Birney
    • [Bioperl-l] Re: Substitution matrix format for Bio::Tools::pSW (Wise2)   Michal Kurowski
      • [Bioperl-l] Re: Substitution matrix format for Bio::Tools::pSW (Wise2)   Ewan Birney
      • [Bioperl-l] Re: Substitution matrix format for Bio::Tools::pSW (Wise2)   Jason Stajich
  • [Bioperl-l] Substitution matrix format for Bio::Tools::pSW (Wise2)   Benjamin Berman
• [Bioperl-l] RE: oracle and bioperl/ensembl   Fulton, Tim J
• [Bioperl-l] [Fwd: [Biohackathon] Re: bibliography stuff in perl]   Heikki Lehvaslaiho
• [Bioperl-l] (no subject)   Andrew Hynes
• [Bioperl-l] ID line parsing in swiss.pm   Emmanuel Mongin
  • [Bioperl-l] ID line parsing in swiss.pm   Allen Day
• [Bioperl-l] bioperl available on HP machines (HPUX11 in particular) ?   REARICK,GABRIELE (HP-FtCollins,ex1)
• [Bioperl-l] Re: Bioperl-l digest, Vol 1 #611 - 14 msgs   Gong Cheng
• [Bioperl-l] spam, viral email & info needed for the next Open Bio Foundation newsletter   chris dagdigian
• [Bioperl-l] Re: collaborations   Elia Stupka
  • [Bioperl-l] Re: collaborations   Arek Kasprzyk
• [Bioperl-l] Re: collaborations   Eduardo Eyras
• [Bioperl-l] problem using BPlite   Hao Liu
• [Bioperl-l] Update of Bioperl tutorial for release 1.0   Peter Schattner
• [Bioperl-l] Restricting annotations   Matthew Pocock
• [Bioperl-l] (no subject)   Xiaowu Gai
  • [Bioperl-l] (no subject)   Heikki Lehvaslaiho
• [Bioperl-l] problems with perling Makefile.PL   kristen briggs
  • [Bioperl-l] problems with perling Makefile.PL   Heikki Lehvaslaiho
• [Bioperl-l] requesting NT files from Genbank   Noah Zaitlen
  • [Bioperl-l] requesting NT files from Genbank   Heikki Lehvaslaiho
• [Bioperl-l] Searching by GI   Noah Zaitlen
  • [Bioperl-l] Searching by GI   Heikki Lehvaslaiho
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1080 (fwd)   Jason Stajich
• [Bioperl-l] checking out all active bioperl CVS modules   Jason Stajich
• [Bioperl-l] miscellanea   Jason Stajich
  • [Bioperl-l] miscellanea   David Block
• [Bioperl-l] miscellanea   Jason Stajich
• [Bioperl-l] ORF FInder   Lynn Stevens
  • [Bioperl-l] ORF FInder   Jason Stajich
    • [Bioperl-l] ORF FInder   Brian Osborne
  • [Bioperl-l] ORF FInder   Heikki Lehvaslaiho
• [Bioperl-l] Markers and Maps   Heikki Lehvaslaiho
  • [Bioperl-l] bioperl-db - changes   Chris Mungall
• [Bioperl-l] Summer Job   Radim7@atlas.cz
• [Bioperl-l] SeqIO unwilling to work   Michal Kurowski
  • [Bioperl-l] SeqIO unwilling to work   Gert Thijs
• [Bioperl-l] updating the swissprot database   =?iso-8859-1?q?CAROLINE=20BARRETTO?=
  • [Bioperl-l] updating the swissprot database   Heikki Lehvaslaiho
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1082 (fwd)   Jason Stajich
  • [Bioperl-l] Re: predicted_cds method doesn't return a promaryseqI obj   Hilmar Lapp
• [Bioperl-l] Markers and Maps   Heikki Lehvaslaiho
• [Bioperl-l] 1.0alpha this weekend?   Ewan Birney
  • [Bioperl-l] 1.0alpha this weekend?   Jason Stajich
    • [Bioperl-l] 1.0alpha this weekend?   David Block
      • [Bioperl-l] 1.0alpha this weekend?   Mark Wilkinson
      • [Bioperl-l] 1.0alpha this weekend?   Jason Stajich
    • [Bioperl-l] 1.0alpha this weekend?   Steve Chervitz
      • [Bioperl-l] 1.0alpha this weekend?   Ewan Birney
      • [Bioperl-l] 1.0alpha this weekend?   Jason Stajich
• [Bioperl-l] getting non-seq data from NT_ files   Noah Zaitlen
  • [Bioperl-l] Re: getting non-seq data from NT_ files   Jason Stajich
  • [Bioperl-l] getting non-seq data from NT_ files   Heikki Lehvaslaiho
• [Bioperl-l] Summer Job   Radim7@atlas.cz
• [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Brian Desany
  • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Chris Mungall
    • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Brian Desany
      • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Chris Mungall
      • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Brian Desany
      • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Jason Stajich
  • [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)   Chris Mungall
• [Bioperl-l] Can bioperl parse homologene files?   Andrew Macgregor
• [Bioperl-l] POD fixed again   Heikki Lehvaslaiho
• [Bioperl-l] re: database()   Seth Redmond
• [Bioperl-l] Phred (Flinstone?) Parser   Simon Chan
• [Bioperl-l] [Fwd: [Volunteer] gc_content]   chris dagdigian
• [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] FAQ   Jason Stajich
• [Bioperl-l] Bug in remote Blasts scripts   Danny Navarro
  • [Bioperl-l] Bug in remote Blasts scripts   Jason Stajich
  • [Bioperl-l] Bug in remote Blasts scripts   Beth Kidd
    • [Bioperl-l] Bug in remote Blasts scripts   Paul Gordon
• [Bioperl-l] Homologene again...   Andrew Macgregor
  • [Bioperl-l] Homologene again...   Ewan Birney
  • [Bioperl-l] Homologene again...   Jason Stajich
    • [Bioperl-l] Homologene again...   Andrew Macgregor
    • [Bioperl-l] Homologene again...   Elia Stupka
      • [Bioperl-l] Homologene again...   Jason Stajich
      • [Bioperl-l] Homologene again...   Elia Stupka
• [Bioperl-l] help update dependencies prior to 1.0 release   chris dagdigian
• [Bioperl-l] "POD errors" not detected by podchecker   Brian Osborne
• [Bioperl-l] ORF FInder   Brian Osborne
  • [Bioperl-l] ORF FInder   Jason Stajich
• [Bioperl-l] Sigcleave module problem   Sanjeev Pillai
  • [Bioperl-l] Sigcleave module problem   chris dagdigian
    • [Bioperl-l] Sigcleave module problem   Sanjeev Pillai
      • [Bioperl-l] Sigcleave module problem   Richard Copley
• [Bioperl-l] modifying bioperl module   Simon Chan
• [Bioperl-l] fetching SP by protein ID   Chris Mungall
• [Bioperl-l] bug in genbank.pm   Wang, Kai
  • [Bioperl-l] bug in genbank.pm   Andreas Matern
• [Bioperl-l] Bioperl 1.0alpha   Ewan Birney
  • [Bioperl-l] Bioperl 1.0alpha   Jason Stajich
    • [Bioperl-l] Bioperl 1.0alpha   Heikki Lehvaslaiho
    • [Bioperl-l] Bioperl 1.0alpha   Hilmar Lapp
• [Bioperl-l] local emboss   Jason Stajich
• [Bioperl-l] testable XML::Writer whereabouts   Peter Leopold
  • [Bioperl-l] testable XML::Writer whereabouts   Jason Stajich
• [Bioperl-l] alignment and assembly   Guoneng Zhong
  • [Bioperl-l] alignment and assembly   Jason Stajich
    • [Bioperl-l] alignment and assembly   Robson Francisco de Souza
• [Bioperl-l] how not to use Files when file handlers are required   Guoneng Zhong
  • [Bioperl-l] how not to use Files when file handlers are required   Jason Stajich
• [Bioperl-l] HomoloGene   Karger, Amir
  • [Bioperl-l] HomoloGene   Andrew Macgregor
• [Bioperl-l] alignment   Guoneng Zhong
  • [Bioperl-l] alignment   Jason Stajich
  • [Bioperl-l] alignment   Ewan Birney
• [Bioperl-l] [housekeeping note] experimental changes to bioperl-l and biojava-l list configuration   chris dagdigian
• [Bioperl-l] HomoloGene   Karger, Amir
  • [Bioperl-l] HomoloGene   Andrew Macgregor
• [Bioperl-l] Homologene parser...   Andrew Macgregor
  • [Bioperl-l] Homologene parser...   Heikki Lehvaslaiho
    • [Bioperl-l] Homologene parser...   Andrew Macgregor
• [Bioperl-l] Motif finding   Desmond Lim
  • [Bioperl-l] Motif finding   Jason Stajich
  • [Bioperl-l] Motif finding   Brian Osborne
• [Bioperl-l] problem in access Ensembl.   Jinhua Wang
  • [Bioperl-l] problem in access Ensembl.   Ewan Birney
• [Bioperl-l] re: blast database()   Seth Redmond
  • [Bioperl-l] re: blast database()   Jason Stajich
  • [Bioperl-l] re: blast database()   Steve Chervitz
• [Bioperl-l] HomoloGene   Karger, Amir
• [Bioperl-l] PPSEARCH, PRINTS, PRFSCAN troubles   Brian Osborne
  • [Bioperl-l] PPSEARCH, PRINTS, PRFSCAN troubles   Ewan Birney
• [Bioperl-l] Re: Motif finding   Boris Lenhard
• [Bioperl-l] Ppsearch, Prints, Prfscan troubles   Brian Osborne
• [Bioperl-l] bioperl on windows   Fabien.COUTELLIER
  • [Bioperl-l] bioperl on windows   Jason Stajich
• [Bioperl-l] Running FastA remotely?   Name Here
• [Bioperl-l] Hinxton Genome Informatics Meeting [apologies for cross posting]   Ewan Birney
• [Bioperl-l] Following the Biohackathon   Brad Chapman
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1099 (fwd)   Jason Stajich
• [Bioperl-l] alignment and assembly   Chad Matsalla
• [Bioperl-l] Creating and retrieving seqfeatures by name   Chad Matsalla
  • [Bioperl-l] Creating and retrieving seqfeatures by name   Jason Stajich
• [Bioperl-l] blast parsing for multiple blast output in one file   Yuandan Zhang
  • [Bioperl-l] blast parsing for multiple blast output in one file   Jason Stajich
• [Bioperl-l] TRANSFER OF FUND   isa yahayaa
• [Bioperl-l] validating a sequence   Andreas Matern
  • [Bioperl-l] validating a sequence   Jason Stajich
    • [Bioperl-l] validating a sequence   Ewan Birney
• [Bioperl-l] what format is this and how I can use AlignIO   Guoneng Zhong
  • [Bioperl-l] what format is this and how I can use AlignIO   Jason Stajich
    • [Bioperl-l] what format is this and how I can use AlignIO   mwilkinson
• [Bioperl-l] Is there a module for reading in ClustalX files   Kostas Thalassinos
  • [Bioperl-l] Is there a module for reading in ClustalX files   Brian Osborne
• [Bioperl-l] oh, the problem   Guoneng Zhong
• [Bioperl-l] alignment of 2 sequences/ FASTA   Simon Chan
  • [Bioperl-l] alignment of 2 sequences/ FASTA   Jonathan Barber
  • [Bioperl-l] alignment of 2 sequences/ FASTA   Jason Stajich
• [Bioperl-l] deprecated blast parse?   Wiepert, Mathieu
• [Bioperl-l] RE: deprecated blast parse?   Wiepert, Mathieu
• [Bioperl-l] Parse Blast -m=1   Wiepert, Mathieu
  • [Bioperl-l] Parse Blast -m=1   Jason Stajich
• [Bioperl-l] alignment of 2 sequences/ FASTA   KERR, ALASTAIR [AG/2165]
• [Bioperl-l] Mailing List   Jason Li Ying
• [Bioperl-l] Sequences for joined features (in a Genbank file)   jchuang@ucsf-104-53.ucsf.edu
  • [Bioperl-l] Sequences for joined features (in a Genbank file)   Ewan Birney
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1109 (fwd)   Jason Stajich
• [Bioperl-l] blastall output error (not in bioperl)   Wiepert, Mathieu
• [Bioperl-l] New to BioPerl   holford.5@osu.edu
  • [Bioperl-l] New to BioPerl   Jason Stajich
• [Bioperl-l] subscribe federaiko@yahoo.it   Federico Malusa
• [Bioperl-l] RE: Bioperl-l digest, Vol 1 #636 - 3 msgs   joe

Last message date: Thu Feb 28 02:07:40 2002
Archived on: Wed Feb 27 21:02:02 2002

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