[Bioperl-l] RE: bioperl-db - changes (Chris Mungall)

[Brian Desany]

<scratching head> I'm doing a "cvs status" and getting this:

>cvs status
cvs server: Examining .
===================================================================
File: BUGS              Status: Up-to-date

   Working revision:    1.2
   Repository revision: 1.2     /home/repository/bioperl/bioperl-db/BUGS,v
   Sticky Tag:          HEAD (revision: 1.2)
   Sticky Date:         (none)
   Sticky Options:      (none)

===================================================================
etc.....
So it _seems_ like I've looking in the right spot for the right files
(correct me if I'm wrong).

Also, since I'm not a cvs expert, I'll tell you that these two commands
bring me the same (old) files (after logging in anonymously):

cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl co -r HEAD
bioperl-db
cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl co bioperl-db

On the other hand, "cvs -d
:pserver:cvs@cvs.bioperl.org:/home/repository/bioperl co -r MAIN bioperl-db"
fails because MAIN isn't a tag (so it tells me). Am I just flat out issuing
the wrong checkout command? I don't do this too often...

-Brian.

> -----Original Message-----
> From: Chris Mungall [mailto:cjm@fruitfly.bdgp.berkeley.edu]
> Sent: Tuesday, February 12, 2002 1:17 PM
> To: Brian Desany
> Cc: bioperl-l@bioperl.org
> Subject: Re: [Bioperl-l] RE: bioperl-db - changes (Chris Mungall)
>
>
>
> Hmm, I just committed on the main branch - this is in the bioperl-db
> project remember.
>
> On Tue, 12 Feb 2002, Brian Desany wrote:
>
> > I don't see these changes when I do "cvs -n -q update" or
> "cvs status" or go
> > to WebCVS - is there normally some kind of a delay or is
> there some other
> > cvs command I need to use to find out which files have been
> changed? Do I
> > need to specify a particular branch maybe?
> >
> > Thanks,
> > -Brian.
> >
> > >
> > > I have committed some code to bioperl-db
> > >
> > > * Fuzzy Locations are now handled, using the
> location_qualifier_value
> > > table added to the biosql-schema during the hackathon.
> > >
> > > * Optimisations - all the features and locations for a
> > > sequence entry are
> > > now fetched in a few SQL calls rather than a number of calls
> > > proportional
> > > to the number of features.
> > >
> > > * Tidying - a lot of mysqlisms removed or pushed up to
> the BaseAdaptor
> > > layer, to allow for easier postgres support. Added a few
> > > generic ease of
> > > use methods to BaseAdaptor to more clearly expose the logic in the
> > > individual adaptor layer.
> > >
> > > * DBTestHarness now no longer uses the copy of the schema in the
> > > bioperl-db directory. Instead it checks
> > > ../biosql-schema/sql/biosqldb-mysql.sql - hmmm, this won't
> > > necessarily fit
> > > with the cvs re-organisation. How should we do this? An env
> > > var seems a
> > > bit nasty.
> > >
> > > ---
> > > Chris
> > >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> >
>
>