[Bioperl-l] re: blast database()

[Jason Stajich]

Seth -

As has been mentioned on the list and as is making its way into the new
FAQ - bugs or problems with Bio::Tools::Blast are likely not going to get
fixed.

Consider switching to Bio::SearchIO available in the 1.0alpha or
Bio::Tools::BPlite available in 0.7.X and on.

-jason

On Wed, 20 Feb 2002, Seth Redmond wrote:

> I'm having some trouble getting the blast::hits... database() method to
> work. (i.e. to find the exact fasta sequence I'm matching against in my
> database.
>
> $database = @hits[$j]->database();
>
> returns a dash instead of the database name. I've tried a number of
> different databases with this. Are there any relevant examples which I
> might have a look at? Anyone have any advice?
>
> thanks
>
> -s
>
> --
> ______________________________________________
> Seth Redmond
>
> DNA resource and Database Curator
> Wellcome Trust Laboratories for Molecular Parasitology
> Department of Biological Sciences
> Imperial College
> London
> SW7 2AY
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>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu