[Bioperl-l] A second ensembl issue rears its head . . .

[James Smith]

On Thu, 31 Jan 2002, Tomso.Daniel wrote:

> 
> DBD::mysql::st execute failed: Unknown column 't.gene' in 'field list' at
> /usr/lib/perl5/site_perl/5.6.0/Bio/EnsEMBL/Virtual/StaticContig.pm line 2172.
> DBD::mysql::st execute failed: Unknown column 't.gene' in 'field list' at
> /usr/lib/perl5/site_perl/5.6.0/Bio/EnsEMBL/Virtual/StaticContig.pm line 2172.
> 
> ## While trying to get_all_RepeatFeatures:
> 
> DBD::mysql::st execute failed: Table 'homo_sapiens_core_130.analysis' doesn't
> exist at /usr/lib/perl5/site_perl/5.6.0/Bio/EnsEMBL/DBSQL/Feature_Obj.pm line
> 474.
> DBD::mysql::st execute failed: Table 'homo_sapiens_core_130.analysis' doesn't
> exist at /usr/lib/perl5/site_perl/5.6.0/Bio/EnsEMBL/DBSQL/Feature_Obj.pm line
> 474.

Which version of the EnsEMBL API are you using... in the 130 code-base
these calls should be using the gene/feature adaptor model, not the older
_obj model.

James