[Bioperl-l] alignment and assembly
Tue, 19 Feb 2002 09:25:03 -0500
I am trying to write an alignment function and an assembly function for
dna sequences. I looked at the the Bio::Align modules and am not sure
how they can help me. I am used to seeing two sequences align with bars
indicating that nucleotide on the top sequence matches with that in the
lower sequence. Is there a tutorial or example like that on the site?
As for assembly, is there something like the TIGR Assembler that allows
me to input two sequences and get hopefully one sequence out?
(Obviously, I an make command line calls to TIGR Assembler, but perhaps
a Bioperl interface?).