[Bioperl-l] Re: collaborations

[Arek Kasprzyk]

On Fri, 8 Feb 2002, Elia Stupka wrote:

> > Just talking about group of protein sequences, which looks like 
> > protein families :), I plan (for after NCBI28 Ensembl release) to work 
> > on multiple alignments of protein families using clustalw combined with 
> > T-coffee, or T-coffee alone. :) 
> 
> That is exactly where we are heading, and where Jason Stajich is working a
> lot too. We would draw trees from groups of orthologues and paralogues
> that we spot during our synteny finding process. 
> 
> We need to get to work together on this,

I am very much interested in the protein side of this as we are now
planning to integrate all species into our data mining system. I am just
not sure if that's can still be called a collaboration or is it just a
parasitic interaction on my part :-)

arek




> 
> more on Monday, otherwise I'll miss my flight
> 
> Elia 
> 
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Dr Arek Kasprzyk
EMBL-European Bioinformatics Institute.
Wellcome Trust Genome Campus, Hinxton, 
Cambridge CB10 1SD, UK.
Tel: +44-(0)1223-494606
Fax: +44-(0)1223-494468
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