[Bioperl-l] Motif finding

[Brian Osborne]

Desmond,

Jason mentioned the SeqPattern module and tools from EMBOSS. There's also a
CPAN module called String::Approx that will do the "find 80% exact"
(http://search.cpan.org/doc/JHI/String-Approx-3.18/Approx.pm).

Brian O.

----- Original Message -----
From: "Desmond Lim" <desmond@imcb.nus.edu.sg>
To: <bioperl-l@bioperl.org>
Sent: Tuesday, February 19, 2002 11:49 PM
Subject: [Bioperl-l] Motif finding


> Is there a way of finding motifs in a strand of DNA?
> The thing is, I want to find exact matches and some fuzzy ones (i.e 80%
exact). Is
> there a perl module to do it?
>
> Thanks.
>
> Desmond
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