[Bioperl-l] ORF FInder

[Lynn Stevens]

Is there a module in BioPerl which allows you to take a sequence and get 
back a list of all the ORFs (or even just the largest ORF) in all six frames 
(or even just one frame) indexed by sequence position.

In other words you would submit a seq object and you would get back a set of 
numbers which tell you where the ORFs are located in the sequence.

I have looked through all the documentation and still can not find this 
feature even though it seem like an extremely common task.

Thanks for any help,

Lynn


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