[Bioperl-l] Parse Blast -m=1

Wiepert, Mathieu Wiepert.Mathieu@mayo.edu
Tue, 26 Feb 2002 14:03:51 -0600 

Hi,

Can SearchIO handle different formats of blast output, or does it need the
default?  I tried a blast with 'm' => '1', the blast output was good, the
parser didn't work.  Got 

[blastall] ERROR: ncbiapi [000.000]  NM_000754: SeqPortNew: gi|14171611
stop(870) >= len(840)

-Mat