September 2003 Archives by thread

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Starting: Mon Sep 1 01:29:13 EST 2003
Ending: Tue Sep 30 22:29:54 EST 2003
Messages: 301

• [Bioperl-l] ace to msf format?   Wes Barris
  • [Bioperl-l] ace to msf format?   Robson Francisco de Souza
    • [Bioperl-l] ace to msf format?   Jason Stajich
      • [Bioperl-l] ace to msf format?   Wes Barris
• [Bioperl-l] Re: How Energy Storage can help us ?   Flywheel
• [Bioperl-l] Re: How Energy Storage can help us ?   Flywheel
• [Bioperl-l] bugs on branch; tests on main trunk   Heikki Lehvaslaiho
  • cloning and Storable Re: [Bioperl-l] bugs on branch; tests on main trunk   Heikki Lehvaslaiho
    • cloning and Storable Re: [Bioperl-l] bugs on branch; tests on main trunk   Ewan Birney
      • cloning and Storable Re: [Bioperl-l] bugs on branch; tests on main trunk   Hilmar Lapp
      • cloning and Storable Re: [Bioperl-l] bugs on branch; tests on main trunk   Lincoln Stein
      • cloning and Storable Re: [Bioperl-l] bugs on branch; tests on main trunk   lehvasla at ebi.ac.uk
• [Bioperl-l] doing a 1.2.3 release   Heikki Lehvaslaiho
• [Bioperl-l] planning for bioperl 1.4   Heikki Lehvaslaiho
• [Bioperl-l] (no subject)   Luc.Gauthier at aventis.com
• [Bioperl-l] GeneDB Question   Markus Kador
  • [Bioperl-l] GeneDB Question   Keith James
    • [Bioperl-l] GeneDB Question   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Graphics::Panel, -spacing => 0 constructor problem.   Lincoln Stein
  • [Bioperl-l] Bio::Graphics::Panel, -spacing => 0 constructor problem.   Philip MacMenamin
    • [Bioperl-l] Bio::Graphics::Panel, -spacing => 0 constructor problem.   Lincoln Stein
• [Bioperl-l] Should we tr y anyways?   Cynthia Pratt
• [Bioperl-l] planning for bioperl 1.4   Richard Adams
  • [Bioperl-l] planning for bioperl 1.4   Ewan Birney
  • [Bioperl-l] planning for bioperl 1.4   Heikki Lehvaslaiho
• [Bioperl-l] codon useage modules   Richard Adams
  • [Bioperl-l] RemoteBlast user: NCBI changer RID extension   Wenwu Cui
  • [Bioperl-l] codon useage modules   Heikki Lehvaslaiho
    • [Bioperl-l] codon useage modules   Richard Adams
• [Bioperl-l] Sir Laugh-a-lot sdyfp   vssInflict Hilarious Pranks
• [Bioperl-l] How was it lat ely?   Kenneth T. Fitzpatrick
• [Bioperl-l] Desperately seeking object model for drug screening experiments in mouse models   Nathan (Nat) Goodman
• [Bioperl-l] help- remote blast   Vesko Baev
  • [Bioperl-l] help- remote blast   Wenwu Cui
• [Bioperl-l] E-value of a combined alignment?   Yee Man Chan
  • [Bioperl-l] E-value of a combined alignment?   Ian Korf
  • [Bioperl-l] E-value of a combined alignment?   Richard Harrington
  • [Bioperl-l] E-value of a combined alignment?   Chris Dwan (CCGB)
    • [Bioperl-l] E-value of a combined alignment?   Ian Korf
• [Bioperl-l] ask for help about the new RID format on NCBI server   Guojun Yang
• [Bioperl-l] BioPerl host space?   Vesko Baev
  • [Bioperl-l] BioPerl host space?   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO: Validate File-Format   Johnny Amos
  • [Bioperl-l] SeqIO: Validate File-Format   Brian Osborne
  • [Bioperl-l] SeqIO: Validate File-Format   Jason Stajich
• [Bioperl-l] remote blast fix   Jason Stajich
• [Bioperl-l] SeqIO: Validate File-Format   Johnny Amos
• [Bioperl-l] SeqFactory diff   Michal Kurowski
  • [Bioperl-l] SeqFactory diff   Hilmar Lapp
    • [Bioperl-l] Re: SeqFactory diff   Michal Kurowski
• [Bioperl-l] Our next seminars dates   Robert Seviour
• [Bioperl-l] Warning: E-mail viruses detected   MailScanner
• [Bioperl-l] comparing two seq   Vesko Baev
  • [Bioperl-l] comparing two seq   Heikki Lehvaslaiho
  • [Bioperl-l] comparing two seq   Heikki Lehvaslaiho
  • [Bioperl-l] comparing two seq   Heikki Lehvaslaiho
• [Bioperl-l] codon useage modules   Richard Adams
  • [Bioperl-l] codon useage modules   Heikki Lehvaslaiho
• [Bioperl-l] comparing two seq   Marc Logghe
• [Bioperl-l] 未承諾広告＊１億円を・・５千万円保証を・・探す方法とは・・   ３億円を５億９千万円証拠有証拠で探す！
• [Bioperl-l] retrieving seq from miltifasta files   Vesko Baev
• [Bioperl-l] Bio::SearchIO::sim4 parser   Luc.Gauthier at aventis.com
• [Bioperl-l] script   Lobvi Matamoros
  • [Bioperl-l] script   Ewan Birney
  • [Bioperl-l] script   James Wasmuth
    • [Bioperl-l] script   Andreas Kahari
  • [Bioperl-l] script   Brian Osborne
  • [Bioperl-l] script   James Wasmuth
• [Bioperl-l] Running Blast and Hiding Error Message   James Wasmuth
• [Bioperl-l] script for Win32   Lobvi Matamoros
• [Bioperl-l] Blastx parser misses scores   Holland, Richard
  • [Bioperl-l] Blastx parser misses scores   Jason Stajich
• [Bioperl-l] Blastx parser misses scores   Holland, Richard
  • [Bioperl-l] Blastx parser misses scores   Jason Stajich
• [Bioperl-l] cloning and Storable   Will Spooner
• [Bioperl-l] Re: cloning and Storable   Ewan Birney
• [Bioperl-l] 2seq compare?   Vesko Baev
  • [Bioperl-l] 2seq compare?   Heikki Lehvaslaiho
• [Bioperl-l] Re: cloning and Storable   Heikki Lehvaslaiho
  • [Bioperl-l] Re: cloning and Storable   Will Spooner
    • [Bioperl-l] Re: cloning and Storable   Heikki Lehvaslaiho
      • [Bioperl-l] Re: cloning and Storable   Will Spooner
      • [Bioperl-l] Re: cloning and Storable   Heikki Lehvaslaiho
      • [Bioperl-l] Re: cloning and Storable   Ewan Birney
      • [Bioperl-l] Re: cloning and Storable   Heikki Lehvaslaiho
• [Bioperl-l] RE: [Bioperl-guts-l] [Bug 1509] Two tutorial problems: missing datafile and incorrect example   Brian Osborne
• [Bioperl-l] Re: SeqFactory diff   Hilmar Lapp
  • [Bioperl-l] Re: SeqFactory diff   Michal Kurowski
• [Bioperl-l] Fwd: Help   Aaron J. Mackey
  • [Bioperl-l] Fwd: Help   Lincoln Stein
• [Bioperl-l] Bio::SeqIO   Lobvi Matamoros
• [Bioperl-l] can't start 'water'   Vesko Baev
  • [Bioperl-l] can't start 'water'   Jason Stajich
  • [Bioperl-l] can't start 'water'   Catherine Letondal
• [Bioperl-l] TCoffee question?   Vesko Baev
  • [Bioperl-l] TCoffee question?   Shawn Hoon
• [Bioperl-l] TCoffee message   vesi_radeva at mail.bg
• [Bioperl-l] BioPerl problem - can anyone help me?   Vesko Baev
• [Bioperl-l] Bio::DB::GFF feature request granted   lstein at cshl.edu
• [Bioperl-l] Problems with biosql   Christopher Mason
  • [Bioperl-l] Problems with biosql   Hilmar Lapp
• [Bioperl-l] clustalw alignment display format   Jack Chen
  • [Bioperl-l] clustalw alignment display format   Shawn Hoon
• [Bioperl-l] Undelivered mail: Your details   DrWeb-DAEMON
• [Bioperl-l] codon useage modules   Richard Adams
  • [Bioperl-l] codon useage modules   Heikki Lehvaslaiho
• [Bioperl-l] Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel   Philip MacMenamin
• [Bioperl-l] Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel   Philip MacMenamin
  • [Bioperl-l] Connecting Bio::DB::GFF::Features on a Bio::Graphics::Panel   Lincoln Stein
• [Bioperl-l] Bio::SimpleAlign problems   Peter Stogios
  • [Bioperl-l] Bio::SimpleAlign problems   Jason Stajich
  • [Bioperl-l] Bio::SimpleAlign problems   Brian Osborne
  • [Bioperl-l] Bio::SimpleAlign problems   Brian Osborne
• [Bioperl-l] Bio::DB::GenBank problem?   wxu
  • [Bioperl-l] Bio::DB::GenBank problem?   James Wasmuth
    • [Bioperl-l] Bio::DB::GenBank problem?   wxu
• [Fwd: Re: [Bioperl-l] About Bio::DB::GenBank!]   yaofx
  • [Fwd: Re: [Bioperl-l] About Bio::DB::GenBank!]   wxu
• [Bioperl-l] Help with Bio::DB::Query::GenBank   michael watson (IAH-C)
  • [Bioperl-l] Help with Bio::DB::Query::GenBank   Lincoln Stein
• [Bioperl-l] 1.2.3 release prep, modules needing maintainers   Jason Stajich
  • [Bioperl-l] 1.2.3 release prep, modules needing maintainers   Lincoln Stein
• [Bioperl-l] Help with Bio::DB::Query::GenBank   michael watson (IAH-C)
• [Bioperl-l] Warning and error message using Bio::Biblio module   Siddhartha Basu
  • [Bioperl-l] Warning and error message using Bio::Biblio module   Heikki Lehvaslaiho
• [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Lincoln Stein
  • [BioPerl] Re: [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Mark Wilkinson
    • [BioPerl] Re: [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Jason Stajich
    • [BioPerl] Re: [Bioperl-l] Bemusement with get_seq_by_gi in a CGI script   Jason Stajich
• [Bioperl-l] Bio::DB::GFF problem   Lincoln Stein
• [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] GFF to gene structure pictures   Lincoln Stein
• [Bioperl-l] Warning and error message using Bio::Biblio module   Heikki Lehvaslaiho
• [Bioperl-l] load_gff.pl question   Lincoln Stein
• [Bioperl-l] multiple inheritance   Lincoln Stein
• [Bioperl-l] multiple inheritance   Lincoln Stein
• [Bioperl-l] No version numbers on bioperl pms.   Lincoln Stein
• [Bioperl-l] problem with Graphics   Lincoln Stein
• [Bioperl-l] (no subject)   Gang NIU
• [Bioperl-l] source codes required   =?gb2312?B??=
• [Bioperl-l] genbank parsing   =?gb2312?B??=
• [Bioperl-l] StandAloneBlast for Wu-Blast   Shawn Hoon
• [Bioperl-l] (no subject)   Ewan Birney
  • [Bioperl-l] primer selection   Jonathan M. Manning
• [Bioperl-l] phd format conversion.   sankari thirumal
  • [Bioperl-l] phd format conversion.   Brian Osborne
• [Bioperl-l] foreach (@array)?   Vesko Baev
  • [Bioperl-l] foreach (@array)?   Josh Lauricha
  • [Bioperl-l] foreach (@array)?   Stephan Bour
  • [Bioperl-l] foreach (@array)?   Jonathan M. Manning
• [Bioperl-l] foreach (@array)?   Stefan Kirov
• [Bioperl-l] Bio::DB::GFF problem   Matthias Wahl
  • [Bioperl-l] Bio::DB::GFF problem   Lincoln Stein
• [Bioperl-l] Question about genbank.pm/SeqIO support for info in SEGMENT Genbank line   Susan Cassidy
• [Bioperl-l] questions: [NULL_Caption] FATAL ERROR: CoreLib [001.000] 1>: Failed to allocate 10000 byte   =?gb2312?B??=
• [Bioperl-l] genbank file parsing   =?gb2312?B??=
• [Bioperl-l] sources code help   =?gb2312?B??=
  • [Bioperl-l] sources code help   Brian Osborne
• [Bioperl-l] Questions: CoreLib [001.000] 1>: Failed to allocate 10000 bytes   Jiang Holly
• [Bioperl-l] genbank file parsing   Jiang Holly
  • [Bioperl-l] genbank file parsing   Wes Barris
• [Bioperl-l] Small change in UniGene file format   Andrew Macgregor
  • [Bioperl-l] Small change in UniGene file format   Hilmar Lapp
    • [Bioperl-l] Small change in UniGene file format   Jason Stajich
      • [Bioperl-l] Small change in UniGene file format   Andrew Macgregor
• [Bioperl-l] draw vertical line and text string in Bio::Graphics::Panel object   Magic Fang
  • [Bioperl-l] draw vertical line and text string in Bio::Graphics::Panel object   Lincoln Stein
• [Bioperl-l] Bio::DB::GenBank problem   Magic Fang
  • [Bioperl-l] Parsing tfasta reports   January Weiner 3
    • [Bioperl-l] Parsing tfasta reports   Jason Stajich
  • [Bioperl-l] Bio::DB::GenBank problem   Lincoln Stein
• [Bioperl-l] modul to search in genomatix   Petra Birth
• [Bioperl-l] search in genomatix   Petra Birth
• [Bioperl-l] blast overview script   Jason Stajich
• [Bioperl-l] How do you pull features out of a genbank file   Wes Barris
• [Bioperl-l] search/parse in genomatix   Petra Birth
• [Bioperl-l] Resume from Mechanical, Civil & Structural Designer   CAD Engineer
• [Bioperl-l] Resume from Mechanical, Civil & Structural Designer   CAD Engineer
• [Bioperl-l] How do you pull features out of a genbank file   Richard Adams
• [Bioperl-l] Bio::DB::GFF & Bio::Graphics updates in branch-1-2   Lincoln Stein
• [Bioperl-l] phd format conversion.   Brian Osborne
• [Bioperl-l] puzzling questions:genbank file changed?   Jiang Holly
• [Bioperl-l] Bio::Graphics output   Vesko Baev
  • [Bioperl-l] Bio::Graphics output   Lincoln Stein
• [Bioperl-l] Bio::Graphics output   Marc Logghe
  • [Bioperl-l] Bio::Graphics output   Niels Larsen
• [Bioperl-l] Bio::Graphics output to file!   Vesko Baev
  • [Bioperl-l] Bio::Graphics output to file!   Jonathan Epstein
  • [Bioperl-l] Bio::Graphics output to file!   Lincoln Stein
• [Bioperl-l] About the bioperl on Tigr_XML access problem   Haidan Guo
• [Bioperl-l] RE: [NORDNS] [Bioperl-guts-l] [Bug 1508] SeqIO allows fasta to masquerade as genbank or gcg or ace   Brian Osborne
• [Bioperl-l] SOAP and bioperl   Al Park
  • [NORDNS] [Bioperl-l] SOAP and bioperl   Brian Osborne
• [NORDNS] [Bioperl-l] SOAP and bioperl   Al Park
• [Bioperl-l] SeqIO::GeneConstructionKit ??   Cook, Malcolm
  • [Bioperl-l] SeqIO::GeneConstructionKit ??   Jason Stajich
• [Bioperl-l] SeqIO::GeneConstructionKit ??   Cook, Malcolm
• [Bioperl-l] bioperl 1.2.3 RC1   Jason Stajich
  • [Bioperl-l] Re: [Bioperl-announce-l] bioperl 1.2.3 RC1   Steve Chervitz
    • [Bioperl-l] Re: [Bioperl-announce-l] bioperl 1.2.3 RC1   Jason Stajich
• [Bioperl-l] Would like to use bioperl and techniques for analysis DNA sequences.   deltoro
  • [Bioperl-l] Would like to use bioperl and techniques for analysis DNA sequences.   Jason Stajich
• [Bioperl-l] SeqIO::GeneConstructionKit ??   Cook, Malcolm
  • [Bioperl-l] SeqIO::GeneConstructionKit ??   Dave Howorth
• [Bioperl-l] order of sublocations   Marc Logghe
  • [Bioperl-l] order of sublocations   Jason Stajich
• [Bioperl-l] Re: SOAP and bioperl   Martin Senger
• [Bioperl-l] Re: SOAP and bioperl   Al Park
• [Bioperl-l] order of sublocations   Marc Logghe
• [Bioperl-l] proposed changes to RangeI.pm   Chris Mungall
  • [Bioperl-l] proposed changes to RangeI.pm   Hilmar Lapp
    • [Bioperl-l] proposed changes to RangeI.pm   Heikki Lehvaslaiho
  • [Bioperl-l] proposed changes to RangeI.pm   Chris Mungall
• [Bioperl-l] Finding modules on hard disk   Chet Langin
  • [Bioperl-l] Finding modules on hard disk   Shawn Hoon
• [Bioperl-l] Finding modules on hard disk   Marc Logghe
• [Bioperl-l] phd format conversion.   James D. White
• [Bioperl-l] bioperl mirror at iubio.bio.indiana.edu now daily updated   Don Gilbert
• [Bioperl-l] blat module   Jack Chen
  • [Bioperl-l] blat module   Jason Stajich
    • [Bioperl-l] blat module   Jack Chen
• [Bioperl-l] Re: [Bioperl-guts-l] How can i get Data from GenBank file   Jason Stajich
• [Bioperl-l] Circular References   Chet Langin
• [Bioperl-l] [Bioperl-announce-l] Release Announcement: Bioperl 1.2.3   Jason Stajich
• [Bioperl-l] Release Announcement: Bioperl 1.2.3   Jason Stajich
  • [Bioperl-l] Release Announcement: bioperl-microarray 0.1   Allen Day
  • [Bioperl-l] Is Bioperl 1.2.3 in CPAN?   Bernhard Schmalhofer
    • [NORDNS] [Bioperl-l] Is Bioperl 1.2.3 in CPAN?   Brian Osborne
• [Bioperl-l] interfaces   Richard Adams
  • [Bioperl-l] interfaces   Jason Stajich
• [Bioperl-l] Re: bioperl 1.2.3 RC1   Koen van der Drift
  • [NORDNS] [Bioperl-l] Re: bioperl 1.2.3 RC1   Brian Osborne
• [Bioperl-l] Bio::Tools::GFF GFF3 parsing   Jason Stajich
  • [Bioperl-l] Bio::Tools::GFF GFF3 parsing   Lincoln Stein
    • [Bioperl-l] Bio::Tools::GFF GFF3 parsing   Jason Stajich
• [Bioperl-l] R E S U M E   ELECTRICIAN
• [Bioperl-l] R E S U M E   ELECTRICIAN
• [Bioperl-l] GD problem   Vesko Baev
• [Bioperl-l] Bio::TreeIO::tabtree Question   Simon Chan
  • [Bioperl-l] Drawing ASCII trees (was Bio::TreeIO::tabtree Question)   Jason Stajich
• [Bioperl-l] GD problem   Marc Logghe
• [Bioperl-l] Version 1.2.3 class diagram?   Brian Osborne
  • [Bioperl-l] Version 1.2.3 class diagram?   Jason Stajich
• [Bioperl-l] Trees as graphics   basm101
  • [Bioperl-l] Trees as graphics   Jason Stajich
    • [Bioperl-l] Trees as graphics   Allen Day
• [Bioperl-l] Re: [BioSQL-l] gene ontology questions revisited   Hilmar Lapp
• [Bioperl-l] slides of persistent bioperl bosc03 talk   Hilmar Lapp
• [Bioperl-l] Exonerate vulgar lines; SearchIO model   Ewan Birney
  • [Bioperl-l] Re: Exonerate vulgar lines; SearchIO model   Jason Stajich
    • [Bioperl-l] Re: Exonerate vulgar lines; SearchIO model   Ewan Birney
• [Bioperl-l] Re: Trees as graphics   Donald G. Jackson
  • [Bioperl-l] Re: Trees as graphics   basm101
    • [Bioperl-l] Re: Trees as graphics   Jason Stajich
• [Bioperl-l] Re: Warning and error message using Bio::Biblio module   Martin Senger
• [Bioperl-l] Pise modules: testing for service availability   Catherine Letondal
• [Bioperl-l] End-User Development Survey   Catherine Letondal
• [Bioperl-l] Bio::DB::GenBank under mod-perl   Mark Wilkinson
• [Bioperl-l] Script   Lobvi Matamoros
  • [Bioperl-l] Script   Jason Stajich
  • [NORDNS] [Bioperl-l] Script   Brian Osborne
  • [Bioperl-l] Script   Andrew Walsh
• [Bioperl-l] R e s u m e   E N G I N E E R
• [Bioperl-l] R e s u m e   E N G I N E E R
• [Bioperl-l] Bio::Seq documentation?   Wes Barris
  • [NORDNS] [Bioperl-l] Bio::Seq documentation?   Brian Osborne
• [Bioperl-l] Bio::Seq documentation?   Marc Logghe
• [Bioperl-l] Re: [Bug 1526] New: Where in the world is pg.pm?   Lincoln Stein
• [Bioperl-l] Query re installing Bundle::BioPerl packages in a personal directory   Peter Schattner
  • [Bioperl-l] Query re installing Bundle::BioPerl packages in a personal directory   Jason Stajich
    • [NORDNS] Re: [Bioperl-l] Query re installing Bundle::BioPerl packages in a personal directory   Brian Osborne
• [Bioperl-l] SOAP::Lite and bioperl   Al Park
• [Bioperl-l] SOAP::Lite and bioperl   Al Park
• [Bioperl-l] BioPerl 1.2.3   Douglas Joubert
• [Bioperl-l] Entrez interface for NT contigs   Neill White
• [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Starr Hazard
  • [NORDNS] [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Brian Osborne
  • [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Ian Korf
    • [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Peter Stoilov
      • [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Ian Korf
      • [Bioperl-l] matching miRNAs to one or a lot of mRNAs   Stefan Kirov
• [Bioperl-l] Electrical Design   Resume for job
• [Bioperl-l] Electrical Design   Resume for job
• [Bioperl-l] Quo Vadis USA   Bush Bible PNAC
• [Bioperl-l] Quo Vadis USA   Bush Bible PNAC
• [Bioperl-l] RE: problem connecting to remote blast   010381P GOH PHUAY CHENG
• [Bioperl-l] problem with remote blast   010381P GOH PHUAY CHENG
• [Bioperl-l] script installation   Cook, Malcolm
  • [NORDNS] [65.246.187.176] [Bioperl-l] script installation   Brian Osborne
• [Bioperl-l] Bio::Graphics segments problem   Vamsi
• [Bioperl-l] modules for loading HSP data into chado:f eature, featureloc,feature_relationship   Charles Hauser
• [Bioperl-l] blastq3 and remove_rid problem   1 .. 22...333
• [Bioperl-l] parsing blast reports   Martin A. Hansen
  • [Bioperl-l] parsing blast reports   Brian Osborne
  • [Bioperl-l] parsing blast reports   Jason Stajich
• [Bioperl-l] how to pass --noplot option to Bio::Tools::Run::Tmhmm ?   Marc Logghe
  • [Bioperl-l] how to pass --noplot option to Bio::Tools::Run::Tmhmm ?   Jason Stajich
• [Bioperl-l] how to pass --noplot option to Bio::Tools::Run::Tmhmm ?   Marc Logghe
• [Bioperl-l] Windows support?   Brian Osborne
• [Bioperl-l] bioinformatics(BioPerl)/cell biology   Vesko Baev
• [Bioperl-l] palindrome   Jason Stajich

Last message date: Tue Sep 30 22:29:54 EST 2003
Archived on: Thu Oct 2 08:21:52 EST 2003

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