[Bioperl-l] Warning and error message using Bio::Biblio module

[Heikki Lehvaslaiho]

I got it. The warnings are completely harmless. The offending lines
should look like this:

    $VERSION = do { my @r = (q$Revision: 1.5 $ =~ /\d+/g); sprintf
"%d.%-02d", @r };

but since I disabled the CVS keyword expansion before exporting code
into distribution tarball, there is no revision string to match the
regular expression.

Sorry,

	-Heikki


On Tue, 2003-09-09 at 22:35, Siddhartha Basu wrote:
> Hi Heikki,
> 
> Heikki Lehvaslaiho wrote:
> > Siddhartha,
> > 
> > There has been server problems in fetching entries and I am not sure
> > what the current situation is. Martin Senger who should know has been
> > travelling lately but should be soon back.
> Ok, i understand.
> 
> > 
> > However, simply using the modules should not give you error messages. My
> > guess is that you do not have SOAP::Lite installed. Can you run 'man
> > SOAP::Lite'?
> Yes, SOAP::Lite is installed and i can get the manual with man and 
> perldoc command. The script "biblio_soap.pl" under the scripts/biblio 
> directory is also running properly with the warnings. Here is the output
> 
> perl biblio_soap.pl
> 1..10
> # Running under perl version 5.008001 for linux
> # Current time local: Tue Sep  9 17:32:25 2003
> # Current time GMT:   Tue Sep  9 21:32:25 2003
> # Using Test.pm version 1.24
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/BiblioI.pm line 90.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/BiblioI.pm line 90.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/Biblio.pm line 196.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/Biblio.pm line 196.
>      Contact to SOAP server at 127.0.0.1:4444 (server PID: 14301)
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/Biblio/soap.pm line 127.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/Biblio/soap.pm line 127.
> ok 1
> ok 2
> ok 3
> ok 4
> ok 5
> ok 6
> ok 7
> ok 8
> ok 9
> ok 10
>      SOAP server 14301 killed
> 
> -siddhartha
> 
> > 
> > 	-Heikki
> > 
-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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