[Bioperl-l] phd format conversion.

sankari thirumal sankari_thirumal at yahoo.com
Wed Sep 10 12:27:12 EDT 2003


Dear sir,
 
i'm using bioperl version 1.0.1. I could convert fasta to most of the formats except phd. I'm sending the error mesaage. please explain me what i should do. 
the error message is as follows:

 [root at Host0 bioperl-0.9.0]# perl conphd.pl
Bio/SeqIO/phd.pm: phd cannot be found
Exception Can't locate Bio/SeqIO/phd.pm in @INC (@INC contains: /usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at /usr/lib/perl5/site_perl/5.8.0/Bio/SeqIO.pm line 477.

For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Can't use an undefined value as a symbol reference at conphd.pl line 9, <GEN0> line 1.
 
i'll be grateful if could give suugestions to solve this problem
 
with regards
sankari
 
 
 
 


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