[Bioperl-l] sources code help

[Brian Osborne]

Holly,

Although it sounds like you've created your own relational database you
might want to consider using a "standard" schema, like Biosql. With the
Biosql database and the bioperl-db package installed you can load your
sequences using the available loading scripts, extract sequences from the
database as sequence objects, and so on. Very powerful, available for Mysql,
Postgres, and Oracle. Take a look at the most recent biodatabases.pod file
for a brief introduction.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of
lichunjiang at sibs.ac.cn
Sent: Wednesday, September 10, 2003 10:33 PM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] sources code help

Hello:
I\'m a freshmen using this mailinglist as well as bioperl.I\'m now in need
of a programme to parsing .gbk file into a relatively small database with
information intersted not lost.Another progrmme I need is to Blast the whole
human genome with inputted query sequences--I\'ve written a programme which
work well with small datasize fly genome while fail to work with the much
larger human genome.  you\'re appratiated sending me the source codes for
this two programmes.
good wishes
Holly




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