[Bioperl-l] Small change in UniGene file format

[Hilmar Lapp]

Cool. I've been hit by this recently and it was on my list of things to 
do.

Would you care migrating this fix to the branch? Otherwise I may try, 
but I'm afraid I'll be cut from the internet in a couple minutes and 
not be back before Thursday. Or Jason? (The reason I'm asking is that 
it would help everyone loading Unigene into Biosql.)

	-hilmar

On Wednesday, September 10, 2003, at 09:54  PM, Andrew Macgregor wrote:

> Andrew Walsh pointed out in bug report 1491 that the NCBI *.data files 
> now include a version number at the end of the accession number in 
> each SEQUENCE line e.g. ACC=BQ190891.1
>
> I have modified the UniGene module to handle this. The resulting Seq 
> obj in this case now returns BQ190891 as the accession number and 1 as 
> the version. The module can still parse the older format, e.g. 
> accession numbers without version info. I hope this conforms to 
> conventions regarding accession numbers in bioperl.
>
> -- Andrew.
>
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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