[Bioperl-l] Small change in UniGene file format

[Andrew Macgregor]

Yes - I did migrate the fix to the branch and hopefully everything is 
OK ;) - Andrew.


On Wednesday, September 17, 2003, at 12:04  PM, Jason Stajich wrote:

> I think Andrew already did it - any chance you can give it a quick 
> test to
> make sure things are a-okay.
>
> -j
> On Tue, 16 Sep 2003, Hilmar Lapp wrote:
>
>> Cool. I've been hit by this recently and it was on my list of things 
>> to
>> do.
>>
>> Would you care migrating this fix to the branch? Otherwise I may try,
>> but I'm afraid I'll be cut from the internet in a couple minutes and
>> not be back before Thursday. Or Jason? (The reason I'm asking is that
>> it would help everyone loading Unigene into Biosql.)
>>
>> 	-hilmar
>>
>> On Wednesday, September 10, 2003, at 09:54  PM, Andrew Macgregor 
>> wrote:
>>
>>> Andrew Walsh pointed out in bug report 1491 that the NCBI *.data 
>>> files
>>> now include a version number at the end of the accession number in
>>> each SEQUENCE line e.g. ACC=BQ190891.1
>>>
>>> I have modified the UniGene module to handle this. The resulting Seq
>>> obj in this case now returns BQ190891 as the accession number and 1 
>>> as
>>> the version. The module can still parse the older format, e.g.
>>> accession numbers without version info. I hope this conforms to
>>> conventions regarding accession numbers in bioperl.
>>>
>>> -- Andrew.
>>>
>>> _______________________________________________
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>>> Bioperl-l at portal.open-bio.org
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>>>
>>
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
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