[Bioperl-l] Small change in UniGene file format

[Jason Stajich]

I think Andrew already did it - any chance you can give it a quick test to
make sure things are a-okay.

-j
On Tue, 16 Sep 2003, Hilmar Lapp wrote:

> Cool. I've been hit by this recently and it was on my list of things to
> do.
>
> Would you care migrating this fix to the branch? Otherwise I may try,
> but I'm afraid I'll be cut from the internet in a couple minutes and
> not be back before Thursday. Or Jason? (The reason I'm asking is that
> it would help everyone loading Unigene into Biosql.)
>
> 	-hilmar
>
> On Wednesday, September 10, 2003, at 09:54  PM, Andrew Macgregor wrote:
>
> > Andrew Walsh pointed out in bug report 1491 that the NCBI *.data files
> > now include a version number at the end of the accession number in
> > each SEQUENCE line e.g. ACC=BQ190891.1
> >
> > I have modified the UniGene module to handle this. The resulting Seq
> > obj in this case now returns BQ190891 as the accession number and 1 as
> > the version. The module can still parse the older format, e.g.
> > accession numbers without version info. I hope this conforms to
> > conventions regarding accession numbers in bioperl.
> >
> > -- Andrew.
> >
> > _______________________________________________
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> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu