[Bioperl-l] Small change in UniGene file format
Andrew Macgregor
andrew at anatomy.otago.ac.nz
Thu Sep 11 00:54:36 EDT 2003
Andrew Walsh pointed out in bug report 1491 that the NCBI *.data files
now include a version number at the end of the accession number in each
SEQUENCE line e.g. ACC=BQ190891.1
I have modified the UniGene module to handle this. The resulting Seq
obj in this case now returns BQ190891 as the accession number and 1 as
the version. The module can still parse the older format, e.g.
accession numbers without version info. I hope this conforms to
conventions regarding accession numbers in bioperl.
-- Andrew.
More information about the Bioperl-l
mailing list