[Bioperl-l] Warning and error message using Bio::Biblio module

[Heikki Lehvaslaiho]

Siddhartha,

There has been server problems in fetching entries and I am not sure
what the current situation is. Martin Senger who should know has been
travelling lately but should be soon back.

However, simply using the modules should not give you error messages. My
guess is that you do not have SOAP::Lite installed. Can you run 'man
SOAP::Lite'?

	-Heikki


On Tue, 2003-09-09 at 19:47, Siddhartha Basu wrote:
> Hi,
> I am using bioperl-1.2.2 and getting these warning message when using 
> the Bio::Biblio module.
> 
> ++++++++++++++++++++++++++
> #!/usr/bin/perl -w
> use strict;
> use Bio::Biblio;
> ++++++++++++++++++++++
> 
> Just using that module generates following warning messages
> =================================================================
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/BiblioI.pm line 90.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/BiblioI.pm line 90.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/Biblio.pm line 196.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/Biblio.pm line 196.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/Biblio/soap.pm line 127.
> Use of uninitialized value in sprintf at 
> /usr/lib/perl5/site_perl/5.8.0/Bio/DB/Biblio/soap.pm line 127.
> ===================================================================
> 
> Other than that any script using that module returns the error 
> "Unexpected Content-Type '' returned". Even the one liners like
>   perl -MBio::Biblio -e 'print join ("\n", @{ new Bio::Biblio->find 
> ("brazma")->get_all_ids })'
>     perl -MBio::Biblio -e 'print new Bio::Biblio->find ("Java")->find 
> ("perl")->get_count'
> 
> gives the same error.
> 
> Any idea/suggestions.
> 
> -siddhartha
> 
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