[Bioperl-l] Trees as graphics

[Allen Day]

i also have an adapter to draw trees as SVG from newick format.  it's 
still unreleased, i plan on getting it out within the next couple of 
weeks.

-allen


On Fri, 19 Sep 2003, Jason Stajich wrote:

> Install the biperl-run package.
> Bio::Tools::Run::Phylo::Phylip::DrawTree
> or
> Bio::Tools::Run::Phylo::Phylip::DrawGram
> 
> are wrappers around drawtree and drawgram respectively.
> (we currently only support Phylip 3.5 menus)
> 
> I tend to use treeplot as well (http://www.cnrs-gif.fr/pge/bioinfo) and
> output as adobe illustrator file which can be tweaked. No bioperl wrapper
> about this yet, but it is quite easy to script with it already.
> 
> -jason
> On Fri, 19 Sep 2003, basm101 wrote:
> 
> > Hi there,
> >
> > Is there a bioperl feature that allows tree files to be converted easily
> > from PHYLIP Newick format
> > into gif files or other graphics ? At the moment to do this I have to go
> > into TreeView and do "save
> > as graphic". A Perl module to speed this up would be very useful.
> >
> > Thanks,
> > basm101
> >
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> >
> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
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