[Bioperl-l] bugs on branch; tests on main trunk

[Heikki Lehvaslaiho]

On Fri, 2003-08-29 at 17:56, Ewan Birney wrote:
> I have fixed the translate() and pdb res bug on the branch.
> 
Great.

> Heikki or Rob --- does RestrictionEnzyme *really* need Storeable?
> Storeable doesn't come by default on systems, so if it didn't need
> it then it would be more useful not to use it. Any chance of this?

Storable is used to do deep cloning of Enzyme objects. Storable is also
used by Bio::DB::FileCache and Bio::SeqFeature::Collection (or is the
documentation for Collection outdated?). 

Storable is part of 5.8.1 distribution. There is Clone in CPAN which is
faster but less systems are bound to have is.

If you think is is critical to get rid of this dependency I can rewrite
the cloning method.

	-Heikki

> 
> I put a require eval() in tutorial around the restriction enzyme stuff.
> 
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> 
> Chris (and the unflattening crew...) the Unflattener is issueing alot of
> warnings with -w --- any chance of one of you looking at it?
> 
> 
> However, I now have on the main trunk:
> 
> 
> All tests successful, 33 subtests skipped.
> Files=168, Tests=7643, 383 wallclock secs (287.31 cusr + 25.46 csys = 312.77 CPU)
> 
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> Pretty darn impressive.
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
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  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
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