2002-May Archives by Thread

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Starting: Wed May 1 04:43:45 2002
Ending: Fri May 31 20:31:53 2002
Messages: 230

[Bioperl-l] UniGene modules now in CVS Andrew Macgregor
- [Bioperl-l] UniGene modules now in CVS Heikki Lehvaslaiho
  - [Bioperl-l] UniGene modules now in CVS Lincoln Stein
    - [Bioperl-l] UniGene modules now in CVS Heikki Lehvaslaiho
    - [Bioperl-l] UniGene modules now in CVS Ewan Birney
    - [Bioperl-l] UniGene modules now in CVS Lincoln Stein
  - [Bioperl-l] UniGene modules and Bio::Cluster Andrew Macgregor
    - [Bioperl-l] Re: UniGene modules and Bio::Cluster Allen Day
    - [Bioperl-l] Re: UniGene modules and Bio::Cluster Andrew Macgregor
    - [Bioperl-l] Re: UniGene modules and Bio::Cluster Jason Stajich
    - [Bioperl-l] Re: UniGene modules and Bio::Cluster Allen Day
    - [Bioperl-l] Re: UniGene modules and Bio::Cluster Jason Stajich
    - [Bioperl-l] UniGene modules and Bio::Cluster Ewan Birney
    - [Bioperl-l] UniGene modules and Bio::Cluster Lincoln Stein
    - [Bioperl-l] UniGene modules and Bio::Cluster Jason Stajich
[Bioperl-l] your bioperl module (fwd) Hilmar Lapp
[Bioperl-l] ABI file parsing Heikki Lehvaslaiho
- [Bioperl-l] BioSVG [ Was ABI file parsing] Malay
  - [Bioperl-l] BioSVG [ Was ABI file parsing] Lincoln Stein
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Malay
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Malay
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Lincoln Stein
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Malay
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Lincoln Stein
    - [Bioperl-l] BioSVG [ Was ABI file parsing] Malay
- [Bioperl-l] ABI file parsing Lincoln Stein
  - [Bioperl-l] ABI file parsing Malay
    - [Bioperl-l] ABI file parsing Lincoln Stein
    - [Bioperl-l] ABI file parsing Heikki Lehvaslaiho
    - [Bioperl-l] Alignment Score. Maxim Shatsky
[Bioperl-l] Introducing Emotion Recognition SDK for programmers List Manager
[Bioperl-l] RootI again Chris Mungall
[Bioperl-l] test Arif Mohammed
[Bioperl-l] blastp problem Liu Haifeng
- [Bioperl-l] blastp problem Chris Dagdigian
  - [Bioperl-l] blastp problem Liu Haifeng
[Bioperl-l] blastall call --- cannot find index files for databases Liu Haifeng
- [Bioperl-l] blastall call --- cannot find index files for databases Jason Stajich
  - [Bioperl-l] blastall call --- cannot find index files for databases Liu Haifeng
- [Bioperl-l] blastall call --- cannot find index files for databases Leonardo Marino-Ramirez
[Bioperl-l] Bio::Cluster Allen Day
[Bioperl-l] (no subject) Simon K. Chan
[Bioperl-l] UniGene modules now in CVS Hilmar Lapp
[Bioperl-l] ABI file parsing Hilmar Lapp
- [Bioperl-l] ABI file parsing Ewan Birney
[Bioperl-l] UniGene modules now in CVS Hilmar Lapp
[Bioperl-l] Re: blastall call --- cannot find index files for databases Peter Kos
[Bioperl-l] bioinformatics DBMS Software??? screddy
[Bioperl-l] blastall call --- cannot find index files for databases lhaifeng@dso.org.sg
[Bioperl-l] (Kein Betreff) paulseni
[Bioperl-l] EMBL/Genbank pass-thru proxy for Bio::DB::GFF Lincoln Stein
[Bioperl-l] ClusterIO and Unigene Andrew Macgregor
- [Bioperl-l] ClusterIO and Unigene Heikki Lehvaslaiho
[Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL Ze Cheng
- [Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL Jason Stajich
  - [Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL Catherine Letondal
[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1183 Heikki Lehvaslaiho
[Bioperl-l] location binner object Jason Stajich
- [Bioperl-l] location binner object Chris Mungall
- [Bioperl-l] location binner object Lincoln Stein
[Bioperl-l] value problem with EMBOSS Ze Cheng
- [Bioperl-l] value problem with EMBOSS Brian Osborne
[Bioperl-l] one more question about EMBOSS Ze Cheng
[Bioperl-l] EUtils at NCBI CHALFANT_CHRIS_M@Lilly.com
- [Bioperl-l] EUtils at NCBI Brian Osborne
[Bioperl-l] How to retrieve the unigene number Giuseppe Torelli
- [Bioperl-l] How to retrieve the unigene number Andrew Macgregor
[Bioperl-l] BLAST parsing Question Simon K. Chan
- [Bioperl-l] BLAST parsing Question Leonardo Marino-Ramirez
  - [Bioperl-l] BLAST parsing Question Brian Osborne
[Bioperl-l] BLAST parsing Question Wiepert, Mathieu
- [Bioperl-l] BLAST parsing Question Simon K. Chan
  - [Bioperl-l] BLAST parsing Question Brian Osborne
[Bioperl-l] BLAST parsing Question Simon Chan
- [Bioperl-l] BLAST parsing Question Brian Osborne
[Bioperl-l] Bioperl genbank access question (fwd) Aaron J Mackey
[Bioperl-l] aaa keanu rip
[Bioperl-l] Bioperl genbank access question (fwd) CHALFANT_CHRIS_M@Lilly.com
[Bioperl-l] BPlite and frames Andy Nunberg
- [Bioperl-l] BPlite and frames Jason Stajich
- [Bioperl-l] BPlite and frames Leonardo Marino-Ramirez
[Bioperl-l] Generic Blast parsing issue CALLEY_JOHN_N@Lilly.com
- [Bioperl-l] Generic Blast parsing issue Jason Stajich
  - [Bioperl-l] Generic Blast parsing issue Steve Chervitz
[Bioperl-l] 1.01 Jason Stajich
- [Bioperl-l] 1.01 Catherine Letondal
  - [Bioperl-l] 1.01 Jason Stajich
    - [Bioperl-l] 1.01 Heikki Lehvaslaiho
    - [Bioperl-l] 1.01 Catherine Letondal
  - [Bioperl-l] 1.01 Lincoln Stein
[Bioperl-l] Bio::DB:GFF queries Eric Snyder
[Bioperl-l] Bio::DB:GFF queries II Eric Snyder
- [Bioperl-l] Bio::DB:GFF queries II Jason Stajich
[Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Jason Stajich
- [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Ewan Birney
- [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Chris Mungall
  - [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Jason Stajich
  - [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Ewan Birney
- [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Lincoln Stein
  - [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Jason Stajich
[Bioperl-l] BLAST 2 seqs on Differnt Host Simon K. Chan
[Bioperl-l] strand and frames in SearchIO Andy Nunberg
- [Bioperl-l] strand and frames in SearchIO Jason Stajich
[Bioperl-l] RE: Proposal: SemanticMapping and call for info on Gene Objects Hilmar Lapp
[Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects Hilmar Lapp
[Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects Hilmar Lapp
- [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects Matthew Pocock
[Bioperl-l] SearchIO and legacy parser minute overview Jason Stajich
- [Bioperl-l] SearchIO and legacy parser minute overview Steve Chervitz
[Bioperl-l] Fwd: Problems with HPSTableWriter Andy Nunberg
- [Bioperl-l] Fwd: Problems with HPSTableWriter Steve Chervitz
[Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects Ewan Birney
[Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects David Block
[Bioperl-l] Sequence names and descriptions in Bio::SearchIO Andy Nunberg
- [Bioperl-l] Sequence names and descriptions in Bio::SearchIO Jason Stajich
[Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects David Block
[Bioperl-l] GO parsers & event driven parsing framework Chris Mungall
- [Bioperl-l] GO parsers & event driven parsing framework Matthew Pocock
[Bioperl-l] Bioperl pipeline Andy Nunberg
- [Bioperl-l] Bioperl pipeline Elia Stupka
[Bioperl-l] feature holder for testing overlaps, etc Jason Stajich
- [Bioperl-l] feature holder for testing overlaps, etc Lincoln Stein
  - [Bioperl-l] feature holder for testing overlaps, etc Jason Stajich
    - [Bioperl-l] feature holder for testing overlaps, etc Lincoln Stein
[Bioperl-l] Restriction sites in very long dna fragments Mark Nadel
[Bioperl-l] Accessing /gene and /note fields in a GenBank file Adam Witney
- [Bioperl-l] Accessing /gene and /note fields in a GenBank file Mick Watson
- [Bioperl-l] Accessing /gene and /note fields in a GenBank file Damien Mattei
  - [Bioperl-l] Accessing /gene and /note fields in a GenBank file Brian Osborne
    - [Bioperl-l] Accessing /gene and /note fields in a GenBank file Damien Mattei
[Bioperl-l] e- and h-values in psi-blast Sandeep Kishore
[Bioperl-l] RemoteBlast with ASP Aun Ja
[Bioperl-l] postgresql & bioperl-db michael.l.stoppelman.1
- [Bioperl-l] postgresql & bioperl-db Chris Mungall
  - [Bioperl-l] postgresql & bioperl-db Elia Stupka
[Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperl and rolling a relational "biosql" database Chris Dagdigian
- [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperl and rolling a relational "biosql" database Elia Stupka
  - [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperland rolling a relational "biosql" database Mark Wilkinson
[Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperland rolling a relational "biosql" database David Block
[Bioperl-l] reference Elia Stupka
- [Bioperl-l] reference Jason Stajich
  - [Bioperl-l] reference Elia Stupka
    - [Bioperl-l] reference Matthew Pocock
[Bioperl-l] bioperl-pipeline and runnables shawnh@worf.fugu-sg.org
[Bioperl-l] Pise Factory and Application classes Catherine Letondal
- [Bioperl-l] Re: Pise Factory and Application classes Catherine Letondal
[Bioperl-l] Re: Bio::DasI Jason Stajich
- [Bioperl-l] Re: Bio::DasI Lincoln Stein
[Bioperl-l] Bio::DasI Lincoln Stein
[Bioperl-l] Problems with Bio::DB::Flat::OBDAIndex Andreas Matern
- [Bioperl-l] Problems with Bio::DB::Flat::OBDAIndex David Iberri
[Bioperl-l] e-value from RemoteBlast differs from hand made blast Carsten Daub
- [Bioperl-l] e-value from RemoteBlast differs from hand made blast Michael Spitzer
[Bioperl-l] e-value from RemoteBlast differs from hand made b last Martin Schenker
- [Bioperl-l] e-value from RemoteBlast differs from hand made blast Carsten Daub
[Bioperl-l] Intron Exon Retrieval Intikhab Alam
[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1193 Jason Stajich
- [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1193 James D. White
[Bioperl-l] e-value from RemoteBlast differs from hand made blast Peter Kos
[Bioperl-l] Loading Genbank records into BioSQL db Keith Allen
[Bioperl-l] Creating a Bio::SeqIO with a string Cory Spencer
- [Bioperl-l] Creating a Bio::SeqIO with a string Jason Stajich
[Bioperl-l] Creating a Bio::SeqIO with a string CHALFANT_CHRIS_M@Lilly.com
[Bioperl-l] Re: Bio::DasI Hilmar Lapp
- [Bioperl-l] Re: Bio::DasI Lincoln Stein
[Bioperl-l] biosql & postgresql & das michael.l.stoppelman.1
[Bioperl-l] reading ace files Susan J. Miller
- [Bioperl-l] reading ace files Brian Osborne
- [Bioperl-l] reading ace files Robson Francisco de Souza
[Bioperl-l] biosql & postgresql & das Hilmar Lapp
[Bioperl-l] Parse BLAST to find mismatches Ken Graham
- [Bioperl-l] Parse BLAST to find mismatches Jason Stajich
[Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees Eduardo Arino de la Rubia
- [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees Jason Stajich
  - [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees Elia Stupka
[Bioperl-l] makemaker released as a module in CPAN Jason Stajich
- [Bioperl-l] makemaker released as a module in CPAN Jason Stajich
[Bioperl-l] each_Reference problem Stefan Kirov
- [Bioperl-l] each_Reference problem Jason Stajich
[Bioperl-l] Accessing the Pubmed/Medline field from a genbank entry Stefan Kirov
- [Bioperl-l] Accessing the Pubmed/Medline field from a genbank entry Jason Stajich
[Bioperl-l] urgent reply. chinonyere ohams
[Bioperl-l] error fetching seqs from a local db on win2k Richard Jacob
- [Bioperl-l] error fetching seqs from a local db on win2k Richard Jacob
  - [Bioperl-l] error fetching seqs from a local db on win2k Jason Stajich
  - [Bioperl-l] error fetching seqs from a local db on win2k Richard Jacob
[Bioperl-l] HMMER Mick Watson
[Bioperl-l] Re: sub_Location in Bio::Location::Simple? Jason Stajich
- [Bioperl-l] Re: sub_Location in Bio::Location::Simple? Charles Tilford
[Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees Steven Cannon
[Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI Eckhard Lehmann
- [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI Heikki Lehvaslaiho
  - [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI Eckhard Lehmann
[Bioperl-l] Automatic typing in Annotation::Collection Charles Tilford
- [Bioperl-l] Automatic typing in Annotation::Collection Charles Tilford
[Bioperl-l] UniGene format change Andrew Macgregor
[Bioperl-l] bioperl FAQ Heikki Lehvaslaiho
- [Bioperl-l] bioperl FAQ Jason Stajich
  - [Bioperl-l] bioperl FAQ Heikki Lehvaslaiho
    - [Bioperl-l] bioperl FAQ Heikki Lehvaslaiho
[Bioperl-l] AUnderwood@PHLS.org.uk
- [Bioperl-l] Jason Stajich
[Bioperl-l] Bio::Structure bug fix for seqres method Alex Gutteridge
- [Bioperl-l] Bio::Structure bug fix for seqres method Kris Boulez
[Bioperl-l] Re: bioperl FAQ peter.masiar@yale.edu
[Bioperl-l] biosql schema michael.l.stoppelman.1
- [Bioperl-l] biosql schema Jason Stajich
[Bioperl-l] Re: sub_Location in Bio::Location::Simple? Hilmar Lapp
[Bioperl-l] Parse BLAST to find mismatches Ken Graham
[Bioperl-l] Blastxml Vilanova,David,LAUSANNE,NRC/BS
[Bioperl-l] standalone blast on 2 databases Damien Mattei
- [Bioperl-l] standalone blast on 2 databases Benoit Piegu
[Bioperl-l] blastXML description " Vilanova,David,LAUSANNE,NRC/BS
[Bioperl-l] Missing Sequences Mick Watson
- [Bioperl-l] Missing Sequences Brian Osborne
  - [Bioperl-l] Missing Sequences Mick Watson
    - [Bioperl-l] Missing Sequences Brian Osborne
- [Bioperl-l] Missing Sequences Ewan Birney
[Bioperl-l] Re: bioperl FAQ peter.masiar@yale.edu
- [Bioperl-l] Re: bioperl FAQ chris dagdigian
  - [Bioperl-l] Re: bioperl FAQ Heikki Lehvaslaiho
[Bioperl-l] Parse BLAST to find mismatches Ryan Brinkman
- [Bioperl-l] Parse BLAST to find mismatches Jason Stajich
- [Bioperl-l] Parse BLAST to find mismatches Ken Graham
[Bioperl-l] release schedule Jason Stajich
- [Bioperl-l] release schedule Ewan Birney
[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1199 Jason Stajich
[Bioperl-l] Problems getting NTs Stefan Kirov
- [Bioperl-l] Problems getting NTs Jason Stajich
[Bioperl-l] 1.01 RC1 Jason Stajich

Last message date: Fri May 31 20:31:53 2002
Archived on: Fri May 31 15:40:03 2002

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