[Bioperl-l] BPlite and frames

[Leonardo Marino-Ramirez]

Dear Andy,

That is intentional. The idea is to make it compatible with GFF
(http://www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml)

Leonardo

On Fri, 10 May 2002, Andy Nunberg wrote:

> Hi,
> I am a new user to bioperl. I am using BPlite to parse blast reports
> (blastn,blastx..) and would
> like to capture frame information for each HSP.  As I iterate over each HSP
> I use the frame subroutine
> but I get a 0-2 number instead of +1 or -3.  Is their a fix to the
> subroutine to return the correct values?
> Andy
> *******************************************************************
> Andy Nunberg, Ph.D
> Computational Biologist
> Orion Genomics, LLC
> (314) 615-6989
> http://www.oriongenomics.com
>
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>

-- 

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  _/    _/      _/_/_/    Leonardo Marino-Ramirez   lmarino@tamu.edu
 _/    _/_/  _/_/    _/  Biochemistry Department, Texas A&M University
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