[Bioperl-l] blastp problem

[Liu Haifeng]

Hi,

Thanks to all who have given clues! I just found that my blast data
directory is empty and nothing has been installed under it.  That should be
the problem.

Regards
Haifeng


----- Original Message -----
From: "Chris Dagdigian" <dag@sonsorol.org>
To: "Liu Haifeng" <lhaifeng@dso.org.sg>
Cc: <bioperl-l@bioperl.org>
Sent: Thursday, May 02, 2002 10:20 PM
Subject: Re: [Bioperl-l] blastp problem


> Liu Haifeng wrote:
> > Hi,
> >
> > "WARNING: Unable to open BLOSUM62
> >
> >  WARNING: BlastScoreBlkMatFill returned non-zero status
> >
> >  WARNING: SetUpBlastSearch failed"
>
>
> Blastall is complaining because it can't locate the file containing the
> BLOSUM62 scoring matrix. If you can find this file yourself you can set
> an environment variable called BLASTMAT that points to the directory.
> That should solve your problem.
>
> -Chris
>
>
> --
> Chris Dagdigian, <dag@sonsorol.org>
> Independent life science IT & research computing consulting
> Office: 617-666-6454, Mobile: 617-877-5498, Fax: 425-699-0193
> Work: http://BioTeam.net PGP KeyID: 83D4310E  Yahoo IM: craffi
>
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