[Bioperl-l] blastp problem

[Chris Dagdigian]

Liu Haifeng wrote:
> Hi,
> 
> "WARNING: Unable to open BLOSUM62
> 
>  WARNING: BlastScoreBlkMatFill returned non-zero status
> 
>  WARNING: SetUpBlastSearch failed"


Blastall is complaining because it can't locate the file containing the 
BLOSUM62 scoring matrix. If you can find this file yourself you can set 
an environment variable called BLASTMAT that points to the directory. 
That should solve your problem.

-Chris


-- 
Chris Dagdigian, <dag@sonsorol.org>
Independent life science IT & research computing consulting
Office: 617-666-6454, Mobile: 617-877-5498, Fax: 425-699-0193
Work: http://BioTeam.net PGP KeyID: 83D4310E  Yahoo IM: craffi