[Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1193

[Jason Stajich]

James - I think I have already fixed this bug in the CVS version of the
code - are you able to check out the code from the repository?  I will
double check nonetheless.

I hope to have a 1.01 candidate ready for download in the next 2 weeks
which should contain the fix in the event you cannot access the src code
via CVS.

-jason

On Wed, 22 May 2002 bioperl-bugs@bioperl.org wrote:

> JitterBug notification
>
> new message incoming/1193
>
> Message summary for PR#1193
> 	From: jdwhite@ou.edu
> 	Subject: SearchIO does not return full hit description
> 	Date: Wed, 22 May 2002 16:02:26 -0400
> 	0 replies 	0 followups
>
> ====> ORIGINAL MESSAGE FOLLOWS <====
>
> >From jdwhite@ou.edu Wed May 22 16:02:26 2002
> Received: from localhost (localhost [127.0.0.1])
> 	by pw600a.bioperl.org (8.12.2/8.12.2) with ESMTP id g4MK2Qdo024517
> 	for <bioperl-bugs@pw600a.bioperl.org>; Wed, 22 May 2002 16:02:26 -0400
> Date: Wed, 22 May 2002 16:02:26 -0400
> Message-Id: <200205222002.g4MK2Qdo024517@pw600a.bioperl.org>
> From: jdwhite@ou.edu
> To: bioperl-bugs@bioperl.org
> Subject: SearchIO does not return full hit description
>
> Full_Name: James D. White
> Module: Bio::SearchIO
> Version: 1.0
> PerlVer: 5.6.1
> OS: Solaris 8
> Submission from: dna2.chem.ou.edu (129.15.12.34)
>
>
> When using Bio::SearchIO to parse blastall 2.2.2
> reports, the description() method for
> Bio::Search::Hit::HitI objects returns only the
> first line of a multi-line hit description.
> I have tried parsing results of both BLASTN and
> BLASTX reports.  They both have the same problem.
> Bio::Tools::Blast returns the full description,
> but Bio::SearchIO does not.
>
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu