2002-May Archives by Subject

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Starting: Wed May 1 04:43:45 2002
Ending: Fri May 31 20:31:53 2002
Messages: 230

• [Bioperl-l] (Kein Betreff)   paulseni
• [Bioperl-l] (no subject)   Simon K. Chan
• [Bioperl-l] 1.01   Jason Stajich
• [Bioperl-l] 1.01   Catherine Letondal
• [Bioperl-l] 1.01   Jason Stajich
• [Bioperl-l] 1.01   Heikki Lehvaslaiho
• [Bioperl-l] 1.01   Catherine Letondal
• [Bioperl-l] 1.01   Lincoln Stein
• [Bioperl-l] 1.01 RC1   Jason Stajich
• [Bioperl-l]   AUnderwood@PHLS.org.uk
• [Bioperl-l]   Jason Stajich
• [Bioperl-l] aaa   keanu rip
• [Bioperl-l] ABI file parsing   Heikki Lehvaslaiho
• [Bioperl-l] ABI file parsing   Lincoln Stein
• [Bioperl-l] ABI file parsing   Malay
• [Bioperl-l] ABI file parsing   Lincoln Stein
• [Bioperl-l] ABI file parsing   Heikki Lehvaslaiho
• [Bioperl-l] ABI file parsing   Hilmar Lapp
• [Bioperl-l] ABI file parsing   Ewan Birney
• [Bioperl-l] Accessing /gene and /note fields in a GenBank file   Adam Witney
• [Bioperl-l] Accessing /gene and /note fields in a GenBank file   Mick Watson
• [Bioperl-l] Accessing /gene and /note fields in a GenBank file   Damien Mattei
• [Bioperl-l] Accessing /gene and /note fields in a GenBank file   Brian Osborne
• [Bioperl-l] Accessing /gene and /note fields in a GenBank file   Damien Mattei
• [Bioperl-l] Accessing the Pubmed/Medline field from a genbank entry   Jason Stajich
• [Bioperl-l] Accessing the Pubmed/Medline field from a genbank entry   Stefan Kirov
• [Bioperl-l] Alignment Score.   Maxim Shatsky
• [Bioperl-l] Automatic typing in Annotation::Collection   Charles Tilford
• [Bioperl-l] Automatic typing in Annotation::Collection   Charles Tilford
• [Bioperl-l] Bio::Cluster   Allen Day
• [Bioperl-l] Bio::DasI   Lincoln Stein
• [Bioperl-l] Bio::DB:GFF queries   Eric Snyder
• [Bioperl-l] Bio::DB:GFF queries II   Eric Snyder
• [Bioperl-l] Bio::DB:GFF queries II   Jason Stajich
• [Bioperl-l] Bio::Structure bug fix for seqres method   Alex Gutteridge
• [Bioperl-l] Bio::Structure bug fix for seqres method   Kris Boulez
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees   Eduardo Arino de la Rubia
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees   Elia Stupka
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw & Phylogenetic trees   Steven Cannon
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Eckhard Lehmann
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Variation::SeqDiff, Bio::Variation::VariantI   Eckhard Lehmann
• [Bioperl-l] bioinformatics DBMS Software???   screddy
• [Bioperl-l] bioperl FAQ   Heikki Lehvaslaiho
• [Bioperl-l] bioperl FAQ   Jason Stajich
• [Bioperl-l] bioperl FAQ   Heikki Lehvaslaiho
• [Bioperl-l] bioperl FAQ   Heikki Lehvaslaiho
• [Bioperl-l] Bioperl genbank access question (fwd)   Aaron J Mackey
• [Bioperl-l] Bioperl genbank access question (fwd)   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] Bioperl pipeline   Andy Nunberg
• [Bioperl-l] Bioperl pipeline   Elia Stupka
• [Bioperl-l] bioperl-pipeline and runnables   shawnh@worf.fugu-sg.org
• [Bioperl-l] biosql & postgresql & das   michael.l.stoppelman.1
• [Bioperl-l] biosql & postgresql & das   Hilmar Lapp
• [Bioperl-l] biosql schema   michael.l.stoppelman.1
• [Bioperl-l] biosql schema   Jason Stajich
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Malay
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Lincoln Stein
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Malay
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Malay
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Lincoln Stein
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Malay
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Lincoln Stein
• [Bioperl-l] BioSVG [ Was ABI file parsing]   Malay
• [Bioperl-l] BLAST 2 seqs on Differnt Host   Simon K. Chan
• [Bioperl-l] BLAST parsing Question   Simon K. Chan
• [Bioperl-l] BLAST parsing Question   Leonardo Marino-Ramirez
• [Bioperl-l] BLAST parsing Question   Wiepert, Mathieu
• [Bioperl-l] BLAST parsing Question   Brian Osborne
• [Bioperl-l] BLAST parsing Question   Simon K. Chan
• [Bioperl-l] BLAST parsing Question   Brian Osborne
• [Bioperl-l] BLAST parsing Question   Simon Chan
• [Bioperl-l] BLAST parsing Question   Brian Osborne
• [Bioperl-l] blastall call --- cannot find index files for databases   Jason Stajich
• [Bioperl-l] blastall call --- cannot find index files for databases   Leonardo Marino-Ramirez
• [Bioperl-l] blastall call --- cannot find index files for databases   Liu Haifeng
• [Bioperl-l] blastall call --- cannot find index files for databases   Liu Haifeng
• [Bioperl-l] blastall call --- cannot find index files for databases   lhaifeng@dso.org.sg
• [Bioperl-l] blastp problem   Liu Haifeng
• [Bioperl-l] blastp problem   Chris Dagdigian
• [Bioperl-l] blastp problem   Liu Haifeng
• [Bioperl-l] Blastxml   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] blastXML description "   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] BPlite and frames   Andy Nunberg
• [Bioperl-l] BPlite and frames   Jason Stajich
• [Bioperl-l] BPlite and frames   Leonardo Marino-Ramirez
• [Bioperl-l] ClusterIO and Unigene   Andrew Macgregor
• [Bioperl-l] ClusterIO and Unigene   Heikki Lehvaslaiho
• [Bioperl-l] Creating a Bio::SeqIO with a string   Cory Spencer
• [Bioperl-l] Creating a Bio::SeqIO with a string   Jason Stajich
• [Bioperl-l] Creating a Bio::SeqIO with a string   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] e- and h-values in psi-blast   Sandeep Kishore
• [Bioperl-l] e-value from RemoteBlast differs from hand made b last   Martin Schenker
• [Bioperl-l] e-value from RemoteBlast differs from hand made blast   Carsten Daub
• [Bioperl-l] e-value from RemoteBlast differs from hand made blast   Carsten Daub
• [Bioperl-l] e-value from RemoteBlast differs from hand made blast   Michael Spitzer
• [Bioperl-l] e-value from RemoteBlast differs from hand made blast   Peter Kos
• [Bioperl-l] each_Reference problem   Jason Stajich
• [Bioperl-l] each_Reference problem   Stefan Kirov
• [Bioperl-l] EMBL/Genbank pass-thru proxy for Bio::DB::GFF   Lincoln Stein
• [Bioperl-l] error fetching seqs from a local db on win2k   Richard Jacob
• [Bioperl-l] error fetching seqs from a local db on win2k   Richard Jacob
• [Bioperl-l] error fetching seqs from a local db on win2k   Jason Stajich
• [Bioperl-l] error fetching seqs from a local db on win2k   Richard Jacob
• [Bioperl-l] EUtils at NCBI   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] EUtils at NCBI   Brian Osborne
• [Bioperl-l] feature holder for testing overlaps, etc   Jason Stajich
• [Bioperl-l] feature holder for testing overlaps, etc   Lincoln Stein
• [Bioperl-l] feature holder for testing overlaps, etc   Jason Stajich
• [Bioperl-l] feature holder for testing overlaps, etc   Lincoln Stein
• [Bioperl-l] Fwd: Problems with HPSTableWriter   Andy Nunberg
• [Bioperl-l] Fwd: Problems with HPSTableWriter   Steve Chervitz
• [Bioperl-l] Generic Blast parsing issue   CALLEY_JOHN_N@Lilly.com
• [Bioperl-l] Generic Blast parsing issue   Jason Stajich
• [Bioperl-l] Generic Blast parsing issue   Steve Chervitz
• [Bioperl-l] GO parsers & event driven parsing framework   Chris Mungall
• [Bioperl-l] GO parsers & event driven parsing framework   Matthew Pocock
• [Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL   Ze Cheng
• [Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL   Jason Stajich
• [Bioperl-l] HELP!!! ALIGN TWO SIMPLE DNA SEQ. USING BIOPERL   Catherine Letondal
• [Bioperl-l] HMMER   Mick Watson
• [Bioperl-l] How to retrieve the unigene number   Andrew Macgregor
• [Bioperl-l] How to retrieve the unigene number   Giuseppe Torelli
• [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperl and rolling a relational "biosql" database   Elia Stupka
• [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperl and rolling a relational "biosql" database   Chris Dagdigian
• [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperland rolling a relational "biosql" database   Mark Wilkinson
• [Bioperl-l] HOWTO doc v1: taking BioSQL + bioperl-db + bioperland rolling a relational "biosql" database   David Block
• [Bioperl-l] Introducing Emotion Recognition SDK for programmers   List Manager
• [Bioperl-l] Intron Exon Retrieval   Intikhab Alam
• [Bioperl-l] Loading Genbank records into BioSQL db   Keith Allen
• [Bioperl-l] location binner object   Jason Stajich
• [Bioperl-l] location binner object   Chris Mungall
• [Bioperl-l] location binner object   Lincoln Stein
• [Bioperl-l] makemaker released as a module in CPAN   Jason Stajich
• [Bioperl-l] makemaker released as a module in CPAN   Jason Stajich
• [Bioperl-l] Missing Sequences   Mick Watson
• [Bioperl-l] Missing Sequences   Brian Osborne
• [Bioperl-l] Missing Sequences   Mick Watson
• [Bioperl-l] Missing Sequences   Ewan Birney
• [Bioperl-l] Missing Sequences   Brian Osborne
• [Bioperl-l] one more question about EMBOSS   Ze Cheng
• [Bioperl-l] Parse BLAST to find mismatches   Ken Graham
• [Bioperl-l] Parse BLAST to find mismatches   Jason Stajich
• [Bioperl-l] Parse BLAST to find mismatches   Ken Graham
• [Bioperl-l] Parse BLAST to find mismatches   Ryan Brinkman
• [Bioperl-l] Parse BLAST to find mismatches   Jason Stajich
• [Bioperl-l] Parse BLAST to find mismatches   Ken Graham
• [Bioperl-l] Pise Factory and Application classes   Catherine Letondal
• [Bioperl-l] postgresql & bioperl-db   michael.l.stoppelman.1
• [Bioperl-l] postgresql & bioperl-db   Chris Mungall
• [Bioperl-l] postgresql & bioperl-db   Elia Stupka
• [Bioperl-l] Problems getting NTs   Jason Stajich
• [Bioperl-l] Problems getting NTs   Stefan Kirov
• [Bioperl-l] Problems with Bio::DB::Flat::OBDAIndex   Andreas Matern
• [Bioperl-l] Problems with Bio::DB::Flat::OBDAIndex   David Iberri
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Ewan Birney
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Chris Mungall
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Jason Stajich
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Ewan Birney
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Jason Stajich
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Ewan Birney
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Jason Stajich
• [Bioperl-l] Proposal: SemanticMapping and call for info on Gene Objects   Lincoln Stein
• [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects   Hilmar Lapp
• [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects   Hilmar Lapp
• [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects   David Block
• [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects   Matthew Pocock
• [Bioperl-l] Proposal: SemanticMapping and call for info on GeneObjects   David Block
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1183   Heikki Lehvaslaiho
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1193   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1193   James D. White
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1199   Jason Stajich
• [Bioperl-l] Re: Bio::DasI   Jason Stajich
• [Bioperl-l] Re: Bio::DasI   Lincoln Stein
• [Bioperl-l] Re: Bio::DasI   Hilmar Lapp
• [Bioperl-l] Re: Bio::DasI   Lincoln Stein
• [Bioperl-l] Re: bioperl FAQ   peter.masiar@yale.edu
• [Bioperl-l] Re: bioperl FAQ   peter.masiar@yale.edu
• [Bioperl-l] Re: bioperl FAQ   chris dagdigian
• [Bioperl-l] Re: bioperl FAQ   Heikki Lehvaslaiho
• [Bioperl-l] Re: blastall call --- cannot find index files for databases   Peter Kos
• [Bioperl-l] Re: Pise Factory and Application classes   Catherine Letondal
• [Bioperl-l] RE: Proposal: SemanticMapping and call for info on Gene Objects   Hilmar Lapp
• [Bioperl-l] Re: sub_Location in Bio::Location::Simple?   Jason Stajich
• [Bioperl-l] Re: sub_Location in Bio::Location::Simple?   Charles Tilford
• [Bioperl-l] Re: sub_Location in Bio::Location::Simple?   Hilmar Lapp
• [Bioperl-l] Re: UniGene modules and Bio::Cluster   Allen Day
• [Bioperl-l] Re: UniGene modules and Bio::Cluster   Andrew Macgregor
• [Bioperl-l] Re: UniGene modules and Bio::Cluster   Jason Stajich
• [Bioperl-l] Re: UniGene modules and Bio::Cluster   Jason Stajich
• [Bioperl-l] Re: UniGene modules and Bio::Cluster   Allen Day
• [Bioperl-l] reading ace files   Susan J. Miller
• [Bioperl-l] reading ace files   Brian Osborne
• [Bioperl-l] reading ace files   Robson Francisco de Souza
• [Bioperl-l] reference   Elia Stupka
• [Bioperl-l] reference   Jason Stajich
• [Bioperl-l] reference   Elia Stupka
• [Bioperl-l] reference   Matthew Pocock
• [Bioperl-l] release schedule   Jason Stajich
• [Bioperl-l] release schedule   Ewan Birney
• [Bioperl-l] RemoteBlast with ASP   Aun Ja
• [Bioperl-l] Restriction sites in very long dna fragments   Mark Nadel
• [Bioperl-l] RootI again   Chris Mungall
• [Bioperl-l] SearchIO and legacy parser minute overview   Jason Stajich
• [Bioperl-l] SearchIO and legacy parser minute overview   Steve Chervitz
• [Bioperl-l] Sequence names and descriptions in Bio::SearchIO   Andy Nunberg
• [Bioperl-l] Sequence names and descriptions in Bio::SearchIO   Jason Stajich
• [Bioperl-l] standalone blast on 2 databases   Damien Mattei
• [Bioperl-l] standalone blast on 2 databases   Benoit Piegu
• [Bioperl-l] strand and frames in SearchIO   Andy Nunberg
• [Bioperl-l] strand and frames in SearchIO   Jason Stajich
• [Bioperl-l] test   Arif Mohammed
• [Bioperl-l] UniGene format change   Andrew Macgregor
• [Bioperl-l] UniGene modules and Bio::Cluster   Andrew Macgregor
• [Bioperl-l] UniGene modules and Bio::Cluster   Ewan Birney
• [Bioperl-l] UniGene modules and Bio::Cluster   Lincoln Stein
• [Bioperl-l] UniGene modules and Bio::Cluster   Jason Stajich
• [Bioperl-l] UniGene modules now in CVS   Andrew Macgregor
• [Bioperl-l] UniGene modules now in CVS   Heikki Lehvaslaiho
• [Bioperl-l] UniGene modules now in CVS   Lincoln Stein
• [Bioperl-l] UniGene modules now in CVS   Heikki Lehvaslaiho
• [Bioperl-l] UniGene modules now in CVS   Ewan Birney
• [Bioperl-l] UniGene modules now in CVS   Lincoln Stein
• [Bioperl-l] UniGene modules now in CVS   Hilmar Lapp
• [Bioperl-l] UniGene modules now in CVS   Hilmar Lapp
• [Bioperl-l] urgent reply.   chinonyere ohams
• [Bioperl-l] value problem with EMBOSS   Ze Cheng
• [Bioperl-l] value problem with EMBOSS   Brian Osborne
• [Bioperl-l] your bioperl module (fwd)   Hilmar Lapp

Last message date: Fri May 31 20:31:53 2002
Archived on: Fri May 31 15:40:03 2002

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