February 2006 Archives by author

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Starting: Thu Feb 2 07:26:09 UTC 2006
Ending: Wed Mar 1 02:41:08 UTC 2006
Messages: 278

[Bioperl-l] Website issues michael watson (IAH-C)
[Bioperl-l] CONTIG sequence files from the NCBI michael watson (IAH-C)
[Bioperl-l] CONTIG sequence files from the NCBI michael watson (IAH-C)
[Bioperl-l] standalone blast composition based statistics parameter Fernan Aguero
[Bioperl-l] Gibbs sampling algorithm? Sam Al-Droubi
[Bioperl-l] Documentation link? Sam Al-Droubi
[Bioperl-l] Count or weight matrix in bioperl? Sam Al-Droubi
[Bioperl-l] Error using Bio::Matrix::GenericMatrix Sam Al-Droubi
[Bioperl-l] Count or weight matrix in bioperl? Sam Al-Droubi
[Bioperl-l] Is it worth it? Sam Al-Droubi
[Bioperl-l] GFF feature start and end points on reverse strand James Allen
[Bioperl-l] proposed additions to Tree and cladogram Georgii A Bazykin
[Bioperl-l] planning sequence mutating modules Georgii A Bazykin
[Bioperl-l] planning sequence mutating modules Georgii A Bazykin
[Bioperl-l] planning sequence mutating modules Georgii A Bazykin
[Bioperl-l] (no subject) Paul Boutros
[Bioperl-l] game xml SeqIO Robert Buels
[Bioperl-l] Bio::Tools::GFF parsing error Robert Buels
[Bioperl-l] Bio::Tools::GFF parsing error Scott Cain
[Bioperl-l] Bio::Graphics off by one? Scott Cain
[Bioperl-l] Bio::Graphics off by one? Scott Cain
[Bioperl-l] RemoteBlast.pm version 1.28 Nagesh Chakka
[Bioperl-l] Problem in BioPerl. Help! Roy Chaudhuri
[Bioperl-l] Count or weight matrix in bioperl? Cook, Malcolm
[Bioperl-l] Pattern Density Cook, Malcolm
[Bioperl-l] Primer maps? Michael Coyne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Sean Davis
[Bioperl-l] error running load_seqdatabase.pl Sean Davis
[Bioperl-l] Primer maps? Sean Davis
[Bioperl-l] Is it worth it? Sean Davis
[Bioperl-l] Medline to XML Allen Day
[Bioperl-l] Is it worth it? Joel Dudley
[Bioperl-l] BioPerlers Represent! Joel Dudley
[Bioperl-l] RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] Gibbs sampling algorithm? Chris Fields
[Bioperl-l] more question regarding RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] RemoteBlast.pm getting RID requests-make/alter themethod? Chris Fields
[Bioperl-l] Handling miRNA's Chris Fields
[Bioperl-l] Handling miRNA's Chris Fields
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Chris Fields
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Chris Fields
[Bioperl-l] RemoteBlast [was: (no subject)] Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blastoutput Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Chris Fields
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Chris Fields
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Chris Fields
[Bioperl-l] Handling miRNA's Chris Fields
[Bioperl-l] Remote BLAST support discussion Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Chris Fields
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Chris Fields
[Bioperl-l] more question regarding RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] more on RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] INSTALL.WIN in wiki Chris Fields
[Bioperl-l] FW: more on RemoteBlast.pm version 1.2 Chris Fields
[Bioperl-l] Added 'Installing bioperl-db in Windows' to wiki, problems with bioperl-db Chris Fields
[Bioperl-l] Added 'Installing Bioperl for Unix' to wiki Chris Fields
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pmversion 1.28 Chris Fields
[Bioperl-l] Added 'Installing bioperl-db in Windows' to wiki, problems with bioperl-db Chris Fields
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Chris Fields
[Bioperl-l] additional error message Chris Fields
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] Minimal versions requirements/warnings for SearchIO text parsing? Chris Fields
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Chris Fields
[Bioperl-l] another searchIO bug? with blast report Chris Fields
[Bioperl-l] Fetching genomic sequences based on HUGO names orGeneIDs Chris Fields
[Bioperl-l] Bio::SearchIO fix posted in Bugzilla Chris Fields
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pm version 1.28 Chris Fields
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pmversion 1.28 Chris Fields
[Bioperl-l] another searchIO bug? with blast report Chris Fields
[Bioperl-l] full chromosome accesscion number mess Chris Fields
[Bioperl-l] bioperl maillist searches not updated Chris Fields
[Bioperl-l] bioperl-db issues Chris Fields
[Bioperl-l] bioperl-db issues Chris Fields
[Bioperl-l] removing sequences from a database? Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] urgent help required - syntax for using paramatersdifferent from default in standalone blast Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] Blast returns result, but does not return hits Chris Fields
[Bioperl-l] extract ncDNA Chris Fields
[Bioperl-l] Bio::SeqIO -- Reading Formated sequence file(Fasta) into Array Chris Fields
[Bioperl-l] WGS sequences through Bio::DB::GenBank Chris Fields
[Bioperl-l] Are frac_identical and frac_conserved methods for hit or for hsp objects? Javier Forment
[Bioperl-l] Tool to mutate DNA sequence Ryan Golhar
[Bioperl-l] Tool to mutate DNA sequence Ryan Golhar
[Bioperl-l] planning sequence mutating modules Ryan Golhar
[Bioperl-l] [BiO BB] Re: Tool to mutate DNA sequence Maximilian Haeussler
[Bioperl-l] [BiO BB] Tool to mutate DNA sequence Maximilian Haeussler
[Bioperl-l] RemoteBlast.pm getting RID requests-make/alter the method? Roger Hall
[Bioperl-l] RemoteBlast users - potentially major changes - please reply Roger Hall
[Bioperl-l] RemoteBlast [was: (no subject)] Roger Hall
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Roger Hall
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Roger Hall
[Bioperl-l] Remote BLAST support discussion Roger Hall
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Roger Hall
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Bio::Graphics off by one? Dave Howorth
[Bioperl-l] Pulling exons out of a Genbank mRNA Amir Karger
[Bioperl-l] Medline to XML Andrej Kastrin
[Bioperl-l] Calpha to Co-ordinates Program Shameer Khadar
[Bioperl-l] Need a slogan for OBF Shameer Khadar
[Bioperl-l] Matrix Average Code / Module ? Shameer Khadar
[Bioperl-l] Count or weight matrix in bioperl? Stefan Kirov
[Bioperl-l] module for finding restriction site in batch of sequences? Lalancette, Claudia
[Bioperl-l] distmat matrix Daniel Lang
[Bioperl-l] Documentation in the Bioperl package Hilmar Lapp
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Hilmar Lapp
[Bioperl-l] Bio::Ontology::Ontology Hilmar Lapp
[Bioperl-l] Bio::Ontology::Ontology Hilmar Lapp
[Bioperl-l] Pulling exons out of a Genbank mRNA Hilmar Lapp
[Bioperl-l] Added 'Installing bioperl-db in Windows' to wiki, problems with bioperl-db Hilmar Lapp
[Bioperl-l] Added 'Installing bioperl-db in Windows' to wiki, problems with bioperl-db Hilmar Lapp
[Bioperl-l] Bio::Ontology::Ontology Hilmar Lapp
[Bioperl-l] Bio::Ontology::Ontology Hilmar Lapp
[Bioperl-l] bioperl-db issues Hilmar Lapp
[Bioperl-l] removing sequences from a database? Hilmar Lapp
[Bioperl-l] [BioSQL-l] Load seqfeature from biosql database with perl Hilmar Lapp
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Heikki Lehvaslaiho
[Bioperl-l] Tool to mutate DNA sequence Heikki Lehvaslaiho
[Bioperl-l] Tool to mutate DNA sequence Heikki Lehvaslaiho
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Heikki Lehvaslaiho
[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif) Heikki Lehvaslaiho
[Bioperl-l] module for finding restriction site in batch of sequences? Heikki Lehvaslaiho
[Bioperl-l] planning sequence mutating modules Heikki Lehvaslaiho
[Bioperl-l] Bio::Ontology::Ontology Heikki Lehvaslaiho
[Bioperl-l] planning sequence mutating modules Heikki Lehvaslaiho
[Bioperl-l] planning sequence mutating modules Heikki Lehvaslaiho
[Bioperl-l] Website issues Heikki Lehvaslaiho
[Bioperl-l] Primer maps? Heikki Lehvaslaiho
[Bioperl-l] Is it worth it? Stephen Gordon Lenk
[Bioperl-l] Bio::Tools::GFF parsing error Marc Logghe
[Bioperl-l] Primer maps? Marc Logghe
[Bioperl-l] bioperl in jail Dr. Lutfullah
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Harry Mangalam
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Harry Mangalam
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Harry Mangalam
[Bioperl-l] Primer maps? Harry Mangalam
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Harry Mangalam
[Bioperl-l] Bio::Ontology::Ontology Sohel Merchant
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Pieter Monsieurs
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Pieter Monsieurs
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pm version 1.28 Pieter Monsieurs
[Bioperl-l] Bio::TreeIO Olena Morozova
[Bioperl-l] Minimal versions requirements/warnings for SearchIO text parsing? Mike Muratet
[Bioperl-l] RemoteBlast.pm getting RID requests-make/alter the method? Bradley J. S. C. Olson
[Bioperl-l] Sorry, failure in post on the net, so still via email Brian Osborne
[Bioperl-l] Documentation in the Bioperl package Brian Osborne
[Bioperl-l] Documentation in the Bioperl package Brian Osborne
[Bioperl-l] Handling miRNA's Brian Osborne
[Bioperl-l] Documentation link? Brian Osborne
[Bioperl-l] module for finding restriction site in batch of sequences? Brian Osborne
[Bioperl-l] Running BLAT with BioPerl Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Brian Osborne
[Bioperl-l] Pulling exons out of a Genbank mRNA Brian Osborne
[Bioperl-l] Pulling exons out of a Genbank mRNA Brian Osborne
[Bioperl-l] game xml SeqIO Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names orGeneIDs Brian Osborne
[Bioperl-l] CONTIG sequence files from the NCBI Brian Osborne
[Bioperl-l] Fetching genomic sequences based on HUGO names orGeneIDs Brian Osborne
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Brian Osborne
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Brian Osborne
[Bioperl-l] Pattern Density Brian Osborne
[Bioperl-l] Pattern Density Brian Osborne
[Bioperl-l] standalone blast composition based statistics parameter Hubert Prielinger
[Bioperl-l] standalone blast composition based statistics parameter Hubert Prielinger
[Bioperl-l] standalone blast composition based statistics parameter Hubert Prielinger
[Bioperl-l] no results with standalone tblastn Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Hubert Prielinger
[Bioperl-l] zip file Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Hubert Prielinger
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing blast output Hubert Prielinger
[Bioperl-l] Help Praveen Raj
[Bioperl-l] Problem in BioPerl. Help! Praveen Raj
[Bioperl-l] Bio::Assembly::IO::phrap and Bio::Assembly::IO::ace with large files Sofia Robb
[Bioperl-l] Sorry, failure in post on the net, so still via email CHANDAN SINGH
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Phillip SanMiguel
[Bioperl-l] standalone blast composition based statistics parameter Torsten Seemann
[Bioperl-l] standalone blast composition based statistics parameter Torsten Seemann
[Bioperl-l] standalone blast composition based statistics parameter Torsten Seemann
[Bioperl-l] no results with standalone tblastn Torsten Seemann
[Bioperl-l] Count or weight matrix in bioperl? Torsten Seemann
[Bioperl-l] Tool to mutate DNA sequence Torsten Seemann
[Bioperl-l] RemoteBlast Torsten Seemann
[Bioperl-l] Remote BLAST support discussion Torsten Seemann
[Bioperl-l] seq_word and pattern counts Torsten Seemann
[Bioperl-l] seq_word and pattern counts Torsten Seemann
[Bioperl-l] seq_word and pattern counts Torsten Seemann
[Bioperl-l] Needed help Raman Deep Singh
[Bioperl-l] seq_word and pattern counts Staffa, Nick (NIH/NIEHS) [C]
[Bioperl-l] seq_word and pattern counts Staffa, Nick (NIH/NIEHS) [C]
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output Jason Stajich
[Bioperl-l] Tool to mutate DNA sequence Jason Stajich
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsingBlast output Jason Stajich
[Bioperl-l] Remote BLAST support discussion Jason Stajich
[Bioperl-l] Running BLAT with BioPerl Jason Stajich
[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs Jason Stajich
[Bioperl-l] Error using Bio::Matrix::GenericMatrix Jason Stajich
[Bioperl-l] distmat matrix Jason Stajich
[Bioperl-l] Website issues Jason Stajich
[Bioperl-l] Website issues Jason Stajich
[Bioperl-l] searchIO bug? Jason Stajich
[Bioperl-l] another searchIO bug? with blast report Jason Stajich
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Jason Stajich
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Jason Stajich
[Bioperl-l] Blast returns result, but does not return hits Jason Stajich
[Bioperl-l] Are frac_identical and frac_conserved methods for hit or for hsp objects? Jason Stajich
[Bioperl-l] Bio::SeqIO -- Reading Formated sequence file (Fasta) into Array Jason Stajich
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blastoutput Joel Steele
[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsingBlast output Joel Steele
[Bioperl-l] searchIO bug? Anders Stegmann
[Bioperl-l] another searchIO bug? Anders Stegmann
[Bioperl-l] another searchIO bug? with blast report Anders Stegmann
[Bioperl-l] Bio::Graphics off by one? Lincoln Stein
[Bioperl-l] Bio::Graphics off by one? Lincoln Stein
[Bioperl-l] Bio::Graphics off by one? Lincoln Stein
[Bioperl-l] Bio::Graphics off by one? Lincoln Stein
[Bioperl-l] Bio::Graphics off by one? Lincoln Stein
[Bioperl-l] GFF feature start and end points on reverse strand Lincoln Stein
[Bioperl-l] Tool to mutate DNA sequence Boris Steipe
[Bioperl-l] bioperl in jail Boris Steipe
[Bioperl-l] Matrix Average Code / Module ? Boris Steipe
[Bioperl-l] Is it worth it? Boris Steipe
[Bioperl-l] Bioperl use question Philip M Terry
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Gabriel Valiente
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Gabriel Valiente
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Gabriel Valiente
[Bioperl-l] Local flat file implementation of Bio::DB::Taxonomy Gabriel Valiente
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Blast returns result, but does not return hits Raghunath Verabelli
[Bioperl-l] Running BLAT with BioPerl Victor
[Bioperl-l] Running BLAT with BioPerl Victor
[Bioperl-l] Bio::SeqIO -- Reading Formated sequence file (Fasta) into Array Edward WIJAYA
[Bioperl-l] more question regarding RemoteBlast.pm version 1.28 Guojun Yang
[Bioperl-l] more on RemoteBlast.pm version 1.28 Guojun Yang
[Bioperl-l] more on RemoteBlast.pm version 1.28 Guojun Yang
[Bioperl-l] OK for aa seq but not a na seq on RemoteBlast.pm version 1.28 Guojun Yang
[Bioperl-l] Tested-OK Guojun Yang
[Bioperl-l] full chromosome accesscion number mess Guojun Yang
[Bioperl-l] [BiO BB] Tool to mutate DNA sequence pmr at ebi.ac.uk
[Bioperl-l] Count or weight matrix in bioperl? pedro fabre
[Bioperl-l] extract ncDNA perlmails at gmail.com
[Bioperl-l] Handling miRNA's barry.m.dancis at gsk.com
[Bioperl-l] Handling miRNA's barry.m.dancis at gsk.com
[Bioperl-l] Handling miRNA's barry.m.dancis at gsk.com
[Bioperl-l] Website issues khoueiry
[Bioperl-l] [BiO BB] Tool to mutate DNA sequence khoueiry
[Bioperl-l] [Fwd: Re: Pattern Density] khoueiry
[Bioperl-l] Bio::Ontology::Ontology chris mungall
[Bioperl-l] urgent help required - syntax for using paramaters different from default in standalone blast neeti somaiya
[Bioperl-l] urgent help required - syntax for using paramaters different from default in standalone blast neeti somaiya
[Bioperl-l] urgent help required - syntax for using paramaters different from default in standalone blast neeti somaiya
[Bioperl-l] using parameters other than default in standalone blast neeti somaiya
[Bioperl-l] Pattern Density staffa
[Bioperl-l] seq_word and pattern counts staffa

Last message date: Wed Mar 1 02:41:08 UTC 2006
Archived on: Mon Jun 16 02:46:36 UTC 2014

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