[Bioperl-l] Handling miRNA's

[barry.m.dancis at gsk.com]

It's the parser in particular that I need




"Brian Osborne" <osborne1 at optonline.net> 
Sent by: bioperl-l-bounces at lists.open-bio.org
07-Feb-2006 12:05
 
To
barry.m.dancis at gsk.com, "bioperl-l" <bioperl-l at bioperl.org>, 
bioperl-l-bounces at lists.open-bio.org
cc

Subject
Re: [Bioperl-l] Handling miRNA's






Barry,

If the sequence information is in one of the formats that Bioperl
understands (Genbank, Swissprot flat, and so on) then the answer is yes.
This assumes that the details on sequence that you mentioned are found in
some sequence feature section in the file. But it looks to me like there's
no specialized parser for miRNA sequence per se, I'll be corrected if I'm
wrong.

Brian O.


On 2/6/06 12:17 PM, "barry.m.dancis at gsk.com" <barry.m.dancis at gsk.com> 
wrote:

> Hi --
> 
>         Are there any classes for manipulating miRNA's with functions 
such
> as parsing the name, storing and interlinking pri/pre/mat sequences, 
etc?
> 
> Thanks,
> 
> Barry
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l


_______________________________________________
Bioperl-l mailing list
Bioperl-l at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/bioperl-l