[Bioperl-l] Fetching genomic sequences based on HUGO names or GeneIDs
hjm at tacgi.com
Sun Feb 12 06:46:38 UTC 2006
After perusing the tutorial and other docs for a an evening, I still can't
find the answer to this. Forgive me if I've missed something obvious.
This should not be a novel request, but I've not found it answered. If
bioperl isn't the best way to do this, I'd be grateful to a pointer to a
better way, especially if it includes an illuminating bit of code.
The problem is to retrieve genomic sequences plus & minus some offset from a
locus determined by HUGO keyword or GeneID. This would be a common followup
chore for some extra analysis from a gene expression expt. Or maybe this is
in the DBFetch routines, but I've missed the sequence type to specify...?
Harry J Mangalam - 949 856 2847 (vox; email for fax) - hjm at tacgi.com
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