[Bioperl-l] bioperl 1.4 SearchIO doesn't work parsing Blast output

Hubert Prielinger hubert.prielinger at gmx.at
Wed Feb 8 20:51:41 UTC 2006


Hi,
If I want to parse a Blast Output (Version 2.2.12) with Bio::SearchIO,  
I get the following error message:

MSG: no data for midline Query  1   WWWKWRW  7
STACK Bio::SearchIO::blast::next_result 
/usr/lib/perl5/site_perl/5.8.6/Bio/SearchIO/blast.pm:1151
STACK toplevel 
/home/Hubert/installed/eclipse/workspace/Database_Search/Blast.pl:21

is that a bug......

If I want to parse Blast Output (version 2.2.13), I don't get anything.....
I'm using bioperl 1.4

before, I have installed bioperl 1.4, it worked fine parsing Blast 
Output (version 2.2.12), but I don't remember which bioperl version I 
had installed

thanks in advance

Hubert






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