[Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif)

[Chris Fields]

Heikki, 

I've added the Bio::Tools::RNAMotif module with test suite (24 tests) and
two test data files to bugzilla.  The first data file is needed for normal
tests, the second is for testing parsing with modified data in the score tag
(using sprintf() in the RNAMotif descriptor).  I ran 'perl t\RNAMotif.t' and
they all passed.

Thanks!

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign  

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of 
> Heikki Lehvaslaiho
> Sent: Wednesday, February 08, 2006 12:54 AM
> To: bioperl-l at lists.open-bio.org
> Cc: Chris Fields
> Subject: Re: [Bioperl-l] RNAMotif module (Bio::Tools::RNAMotif)
> 
> Chris,
> 
> Post your files to bugzilla (ticket type enhancement, add 
> files to ticket after creation)  and someone with commit 
> ability will add them to CVS once the code is in satisfactory 
> condition. 
> 
> Thanks,
> 
> 	-Heikki
> 
> On Wednesday 08 February 2006 06:52, Chris Fields wrote:
> > I want to submit a module for parsing RNAMotif output 
> > (Bio::Tools::RNAMotif).  It is capable, at the moment, of scanning 
> > output and returning Bio::SeqFeature::Generic objects with 
> added tags 
> > for descriptors/sequences/file info.  I'm in the process of 
> writing up 
> > tests and going through biodesign to make sure everything's kosher, 
> > but the module itself is essentially ready-to-go.  What should I do 
> > next?
> >
> > Christopher Fields
> > Postdoctoral Researcher
> > Lab of Dr. Robert Switzer
> > Dept of Biochemistry
> > University of Illinois Urbana-Champaign
> >
> >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> -- 
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