[Bioperl-l] WGS sequences through Bio::DB::GenBank

Chris Fields cjfields at uiuc.edu
Wed Mar 1 02:41:08 UTC 2006

I know that a recent post showed that you could retrieve CONTIG sequences
from GenBank files fairly easily:


I'm driving myself a bit buggy looking for this, and I may be blind to it,
but can the same be done with WGS files?  I've tried Bio::DB::GenBank and a
few other Bio::DB* modules to see if it's been implemented but haven't had
any luck yet.  I may try getting around it using Bio::DB::Query::GenBank,
but just trying to find a more direct route.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

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