[Bioperl-l] Sorry, failure in post on the net, so still via email

[Brian Osborne]

Chandan,

I'd be interested in what you find. This is not a new problem, this same
code snippet has been mentioned many times, but for many others, like me,
the code always works.

Brian O.


On 2/2/06 2:26 AM, "CHANDAN SINGH" <chandan.kr.singh at gmail.com> wrote:

> Hi
> It seems that its not a proxy problem. I tried today and faced the same
> problem. It has been months since my last try and therefore something might
> have changed.
> Try reading more on this problem.
> I myself will try to do it.
> Regards
> Chandan
> 
> On 2/2/06, Huang Jian <hjian at kuicr.kyoto-u.ac.jp> wrote:
>> 
>> I tried  some "Quick getting started scripts" in bptutorial.
>> 
>> use Bio::Perl;
>>   $seq = get_sequence('swiss',"ROA1_HUMAN");
>>   # uses the default database - nr in this case
>>   $blast_result = blast_sequence($seq);
>>   write_blast(">roa1.blast",$blast_result);
>> 
>> It returns "Submitted Blast for [ROA1_HUMAN] "
>> It does not return me any error after I run the script.  However, it does
>> not
>> return me any result either.  The file "roa1.blast" is created but is
>> always
>> empty.
>> 
>> I found the return is like the code below in function "blast_sequence"
>>  if( $verbose ) {
>>  print STDERR "Submitted Blast for [".$seq->id."] ";
>>     }
>>     sleep 5;
>> ....
>> I have tested "( env_proxy => 1 )" ...The problem remains the same...
>> 
>> Help! By the way, could you send me an invitation letter of gmail, I want
>> to have a gmail account too... :-)
>> 
>> Best Regards!
>> Jian Huang
>> 
>> 
> 
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