[Bioperl-l] another searchIO bug? with blast report
jason.stajich at duke.edu
Fri Feb 17 19:01:45 UTC 2006
In case people on the list think that by my speaking up about
question means they should ignore it...
Hopefully someone else can help debug this - I really don't have time
On Feb 17, 2006, at 4:18 AM, Anders Stegmann wrote:
>>>> Anders Stegmann <anst at kvl.dk> 02/16/06 11:20 am >>>
> I am blasting a protein seq (query) against an identical seq with a
> deletion of Aa nr 61 (subject).
> Then I print out the type of nomatch Aa and its position.
> The nomatch for the query seq is Aa G at position 61, which is
> The nomatch for the subject seq is V at position 60, which is
> not correct!?
> Is this a bug?
> testblast2.pl is the program to run
> Q0045 is the query seq.
> Q0045del61 is the subject seq (it has to be formated: formatdb -i
> Q0045del61 -p T -o F).
> Regards Anders.
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
More information about the Bioperl-l