[Bioperl-l] game xml SeqIO
Robert Buels
rmb32 at cornell.edu
Mon Feb 13 22:12:10 UTC 2006
Hi all,
Currently, the SeqIO for doing GAME XML does not seem to support writing
(or reading?) <computational_analysis> elements. Am I correct?
If I am, are there any plans to add this functionality? Can I help / do it?
If there are plans to add this, how would one distinguish SeqFeatures
that should be rendered as <computational_analysis> from SeqFeatures
that should be rendered as <annotation>? Would we do that with
Bio::SeqFeature::Computation? I assume that a given Seq can have
SeqFeatures of different types associated with it (I don't know, I'm a
bioperl newb).
Rob
--
Robert Buels
SGN Bioinformatics Analyst
252A Emerson Hall, Cornell University
Ithaca, NY 14853
Tel: 607-255-2360
rmb32 at cornell.edu
http://www.sgn.cornell.edu
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