April 2004 Archives by author

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Starting: Thu Apr 1 04:27:06 EST 2004
Ending: Fri Apr 30 20:33:06 EST 2004
Messages: 294

• [Bioperl-l] Parsing a Fasta file   Chris Dwan (CCGB)
• [Bioperl-l] limiting E value - Argument "e-134" isn't numeric?   Chris Dwan (CCGB)
• [Bioperl-l] Parsing a Fasta file   michael watson (IAH-C)
• [Bioperl-l] Storing Sequences and Alignments   michael watson (IAH-C)
• [Bioperl-l] TreeIO problem   Mikel Ega
• [Bioperl-l] TreeIO problem   Mikel Egaa9pen-b
• [Bioperl-l] Compilation error   Sivakumar.K.C
• [Bioperl-l] deleting string fragments?   Gyoergy Abrusan
• [Bioperl-l] Programming, Algorithms, and Gusfield   Michael B Allen
• [Bioperl-l] deleting string fragments?   Paulo Almeida
• [Bioperl-l] base content   Paulo Almeida
• [Bioperl-l] getting top blast hit   Paulo Almeida
• [Bioperl-l] how to use pipe in perl script?   Paulo Almeida
• [Bioperl-l] How to parse bl2seq report?   Paulo Almeida
• [Bioperl-l] population genetics   Paulo Almeida
• [Bioperl-l] Categorization of EST's by species/taxonomy/lineage   Paulo Almeida
• [Bioperl-l] Speeding Up File Access   Johnny Amos
• [Bioperl-l] tiling hits to multiple alignment   Babenko, Vladimir (NIH/NLM/NCBI)
• [Bioperl-l] Reliability of get_Seq_by_gi   Wes Barris
• [Bioperl-l] Reliability of get_Seq_by_gi   Wes Barris
• [Bioperl-l] Reliability of get_Seq_by_gi   Wes Barris
• [Bioperl-l] Reliability of get_Seq_by_gi   Wes Barris
• [Bioperl-l] Reliability of get_Seq_by_gi   Wes Barris
• [Bioperl-l] limiting E value - Argument "e-134" isn't numeric?   Joseph Bedell
• [Bioperl-l] limiting E value - Argument "e-134" isn't numeric?   Joseph Bedell
• [Bioperl-l] refseqs   Ewan Birney
• [Bioperl-l] Life is easy with Ppr0zacC   Blane
• [Bioperl-l] bio::graphics problem   Andreas Boehm
• [Bioperl-l] distances from one atom to another in biological structures   Michael E Bradley
• [Bioperl-l] paml rst file parser   Michael E Bradley
• [Bioperl-l] Usage of tigr.pm with SeqIO.pm   Simon K. Chan
• [Bioperl-l] SeqIO.pm question   Simon K. Chan
• [Bioperl-l] caBIOperl   Covitz, Peter (NIH/NCI)
• [Bioperl-l] Makefile.PL and cvs.bioperl.org   Chris Dagdigian
• [Bioperl-l] Parsing "hmmsearch" results - help   Alberto Davila
• [Bioperl-l] Parsing "hmmsearch" results - help   Alberto Davila
• [Bioperl-l] refseqs   Sean Davis
• [Bioperl-l] All mouse mRNAs   Sean Davis
• [Bioperl-l] All mouse mRNAs   Sean Davis
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Allen Day
• [Bioperl-l] TreeIO problem   Allen Day
• [Bioperl-l] new module: Bio::Tools::WebBlat   Allen Day
• [Bioperl-l] Makefile.PL and cvs.bioperl.org   Allen Day
• [Bioperl-l] Variation   Allen Day
• [Bioperl-l] StandAloneBlast and Shell Variable Question   Bill Dirks
• [Bioperl-l] protein or dna ?   Koen van der Drift
• [Bioperl-l] Variation   Chris Dwan
• [Bioperl-l] Reliability of get_Seq_by_gi   Rob Edwards
• [Bioperl-l] Reliability of get_Seq_by_gi   Rob Edwards
• [Bioperl-l] failures on the stable branch   Rob Edwards
• [Bioperl-l] Primer3.pm problems.   Rob Edwards
• [Bioperl-l] Problems with installing bioperl using PPM3   Chris Fields
• [Bioperl-l] Problems with installing bioperl using PPM3   Chris Fields
• [Bioperl-l] Batch GenPept - up and running?   Chris Fields
• [Bioperl-l] Problems with installing bioperl using PPM3   Chris Fields
• [Bioperl-l] Problems with installing bioperl using PPM3   Chris Fields
• [Bioperl-l] BioPerl Bootcamp : June 21-25 in Montreal   Sylvain Foisy
• [Bioperl-l] get into list   Finocchiaro Giacomo
• [Bioperl-l] distances from one atom to another in biological structures   Alex Gutteridge
• [Bioperl-l] population genetics   Matthew Hahn
• [Bioperl-l] SVG on the server   Todd Harris
• [Bioperl-l] SVG on the server   Todd Harris
• [Bioperl-l] blastz parser   Karen Hayden
• [Bioperl-l] Patch to CVS to implement ComparableI interface   Peter van Heusden
• [Bioperl-l] Re: ComparableI stuff   Peter van Heusden
• [Bioperl-l] Most used parts of Bioperl   Peter van Heusden
• [Bioperl-l] Most used parts of Bioperl   Peter van Heusden
• [Bioperl-l] Bioperl 1.4 on Debian   Matt Hope
• [Bioperl-l] bioperl-db make test errors   Dave Howorth
• [Bioperl-l] bioperl-db make test errors   Dave Howorth
• [Bioperl-l] TreeIO problem   Dave Howorth
• [Bioperl-l] bioperl-db & biosql documentation   Dave Howorth
• [Bioperl-l] load_ontology/GO error   Dave Howorth
• [Bioperl-l] failures on the stable branch   Dave Howorth
• [Bioperl-l] failures on the stable branch   Dave Howorth
• [Bioperl-l] Makefile.PL and cvs.bioperl.org   Dave Howorth
• [Bioperl-l] load_ontology and GO - progress!   Dave Howorth
• [Bioperl-l] load_ontology and GO - progress!   Dave Howorth
• [Bioperl-l] "Package 'GD' not found on server." Bioperl 1.4 Install   JDCGo at aol.com
• [Bioperl-l] Changes to Bio::Tools::SiRNA   Donald Jackson
• [Bioperl-l] Categorization of EST's by species/taxonomy/lineage   Mark Johnson
• [Bioperl-l] deleting string fragments?   Andreas Kahari
• [Bioperl-l] Segmentation fault   Andreas Kahari
• [Bioperl-l] protein or dna ?   Andreas Kahari
• [Bioperl-l] how to use pipe in perl script?   Andreas Kahari
• [Bioperl-l] module for pattern matching   Andreas Kahari
• [Bioperl-l] Parsing a Genbank file to get the Comment line.   Khan, Sohail
• [Bioperl-l] small change to Bio::Align::Utilities   Stefan Kirov
• [Bioperl-l] small change to Bio::Align::Utilities   Stefan Kirov
• [Bioperl-l] Ensembl Query   Stefan Kirov
• [Bioperl-l] Variation   Stefan Kirov
• [Bioperl-l] Variation   Stefan Kirov
• [Bioperl-l] module for pattern matching- i got it thanx   Stefan Kirov
• [Bioperl-l] Parsing Blast HIT data   Desmond LIM
• [Bioperl-l] StandAloneBlast parameters   Matthew Laird
• [Bioperl-l] StandAloneBlast parameters   Matthew Laird
• [Bioperl-l] Storing Sequences and Alignments   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] Bio::SeqFeature::Generic score & source tags in Biosql   Hilmar Lapp
• [Bioperl-l] Re: ComparableI stuff   Hilmar Lapp
• [Bioperl-l] bioperl-db make test errors   Hilmar Lapp
• [Bioperl-l] load_ontology/GO error   Hilmar Lapp
• [Bioperl-l] failures on the stable branch   Hilmar Lapp
• [Bioperl-l] failures on the stable branch   Hilmar Lapp
• [Bioperl-l] load_ontology and GO - progress!   Hilmar Lapp
• [Bioperl-l] dbEST read pb   Hilmar Lapp
• [Bioperl-l] GO categories and load_ontology.pl   Hilmar Lapp
• [Bioperl-l] All mouse mRNAs   Hilmar Lapp
• [Bioperl-l] Usage of tigr.pm with SeqIO.pm   Josh Lauricha
• [Bioperl-l] GO categories and load_ontology.pl   Law, Annie
• [Bioperl-l] Reliability of get_Seq_by_gi   Heikki Lehvaslaiho
• [Bioperl-l] How sequence fetching should fail?   Heikki Lehvaslaiho
• [Bioperl-l] How sequence fetching should fail?   Heikki Lehvaslaiho
• [Bioperl-l] Perl Regular Expressions sought that match typical   Heikki Lehvaslaiho
• [Bioperl-l] AlignIO: Sequence length appended to name in output   Heikki Lehvaslaiho
• [Bioperl-l] how to use pipe in perl script?   Heikki Lehvaslaiho
• [Bioperl-l] Compilation error   Heikki Lehvaslaiho
• [Bioperl-l] Re: Bio::AlignIO::phylip write_aln ignores line_length   Heikki Lehvaslaiho
• [Bioperl-l] statistics of sequences   Heikki Lehvaslaiho
• [Bioperl-l] Ensembl Query   Heikki Lehvaslaiho
• [Bioperl-l] I would like to subscribe to this mailing list   Heikki Lehvaslaiho
• [Bioperl-l] Variation   Heikki Lehvaslaiho
• [Bioperl-l] Variation   Heikki Lehvaslaiho
• [Bioperl-l] Variation   Heikki Lehvaslaiho
• [Bioperl-l] Parsing a Genbank file to get the Comment line.   Steven Lembark
• [Bioperl-l] Pise Jobs   Catherine Letondal
• [Bioperl-l] From Contig to MSA   Lewis, Christopher
• [Bioperl-l] parsing blast reports- co-ordinate of hit   Marc Logghe
• [Bioperl-l] parsing hmmpfam reports   Marc Logghe
• [Bioperl-l] BOSC 2nd Call For Papers   Darin London
• [Bioperl-l] Perl Regular Expressions sought that match typical   M.Shahid
• [Bioperl-l] failure notice   MAILER-DAEMON at email.seznam.cz
• [Bioperl-l] failure notice   MAILER-DAEMON at free.fr
• [Bioperl-l] Trouble installing bioperl-ext / Bio::SeqIO::staden::read   Aaron J. Mackey
• [Bioperl-l] Storing Sequences and Alignments   Aaron J. Mackey
• [Bioperl-l] Atención: Virus detectado en e-mail   MailScanner
• [Bioperl-l] Warning: E-mail containing attachment(s) blocked   MailScanner
• [Bioperl-l] Warning: E-mail containing attachment(s) blocked   MailScanner
• [Bioperl-l]ABI.pm and .ab1 files   Malay
• [Bioperl-l]ABI.pm and .ab1 files   Malay
• [Bioperl-l] Don't want to donwload sequence contigs!   Jonathan Manning
• [Bioperl-l] Variation   Jonathan Manning
• [Bioperl-l] AssemblyIO (ace), singlets, and Contigs   Chad Matsalla
• [Bioperl-l] Help   Sameet Mehta
• [Bioperl-l] Trouble installing bioperl-ext / Bio::SeqIO::staden::read   Barry Moore
• [Bioperl-l] Pairwise seq. comarison   Barry Moore
• [Bioperl-l] Pise Jobs   Barry Moore
• [Bioperl-l] Problems with installing bioperl using PPM3   Barry Moore
• [Bioperl-l] problem of installing bioperl 1.4: 404 NOT found   Barry Moore
• [Bioperl-l] tiling hits to multiple alignment   Barry Moore
• [Bioperl-l] [Structure of remote GenBank files]   Barry Moore
• [Bioperl-l] installation of graphics module   Barry Moore
• [Bioperl-l] INSTALL.WIN Documentation   Barry Moore
• [Bioperl-l] [Structure of remote GenBank files]   Sebastien Moretti
• [Bioperl-l] [Structure of remote GenBank files]   Sebastien Moretti
• [Bioperl-l] getting top blast hit   Nandita Mullapudi
• [Bioperl-l] getting top blast hit   Nandita Mullapudi
• [Bioperl-l] limiting E value - Argument "e-134" isn't numeric?   Nandita Mullapudi
• [Bioperl-l] parsing blast reports- co-ordinate of hit   Nandita Mullapudi
• [Bioperl-l] tiling hits to multiple alignment   Mike Muratet
• [Bioperl-l] Ensembl and Bio::DB::GFF   Venky Nandagopal
• [Bioperl-l] Bio::Serach::Result::ResultI   Kan Nobuta
• [Bioperl-l] Bio::Serach::Result::ResultI   Kan Nobuta
• [Bioperl-l] Problem with Bio::Assembly::IO::ace   Andrew Nunberg
• [Bioperl-l] Parsing Blast HIT data   Brian Osborne
• [Bioperl-l] Problems with installing bioperl using PPM3   Brian Osborne
• [Bioperl-l] any documentation on bioperl?   Brian Osborne
• [Bioperl-l] bioperl-db & biosql documentation   Brian Osborne
• [Bioperl-l] Compilation error   Brian Osborne
• [Bioperl-l] bioperl-run on windows XP   Brian Osborne
• [Bioperl-l] refseqs   Brian Osborne
• [Bioperl-l] dbEST read pb   Gilles Parmentier
• [Bioperl-l] dbEST read pb   Gilles Parmentier
• [Bioperl-l] dbEST read pb   Gilles Parmentier
• [Bioperl-l] population genetics   Pedro.X.Gomez-Fabre at gsk.com
• [Bioperl-l] refseqs   Phillips, Ken
• [Bioperl-l] deleting string fragments?   Jurgen Pletinckx
• [Bioperl-l] tiling hits to multiple alignment   Jurgen Pletinckx
• [Bioperl-l] Distance between residues   Jurgen Pletinckx
• [Bioperl-l] setting BLAST query name   Rachel Richard
• [Bioperl-l] statistics of sequences   S.Paul
• [Bioperl-l] statistics of sequences   S.Paul
• [Bioperl-l] installation of graphics module   S.Paul
• [Bioperl-l] Stop Spreading Hatred   SAR
• [Bioperl-l] Singapore   Remo Sanges
• [Bioperl-l] StandAloneBlast and Shell Variable Question   Remo Sanges
• [Bioperl-l] any documentation on bioperl?   Remo Sanges
• [Bioperl-l] blast_sequence problem   Regina Schmitt
• [Bioperl-l] blast_sequence problem   Regina Schmitt
• [Bioperl-l] getting top blast hit   Jason Stajich
• [Bioperl-l] Pairwise seq. comarison   Jason Stajich
• [Bioperl-l] limiting E value - Argument "e-134" isn't numeric?   Jason Stajich
• [Bioperl-l] StandAloneBlast parameters   Jason Stajich
• [Bioperl-l] RE:Segmentation fault   Jason Stajich
• [Bioperl-l] RE:Segmentation fault   Jason Stajich
• [Bioperl-l] Bio::Root::Root.pm and taint   Jason Stajich
• [Bioperl-l] Bio::Root::Root.pm and taint   Jason Stajich
• [Bioperl-l] New attribut   Jason Stajich
• [Bioperl-l] Speeding Up File Access   Jason Stajich
• [Bioperl-l] StandAloneBlast and Shell Variable Question   Jason Stajich
• [Bioperl-l] TreeIO problem   Jason Stajich
• [Bioperl-l] blastz parser   Jason Stajich
• [Bioperl-l] failures on the stable branch   Jason Stajich
• [Bioperl-l] Most used parts of Bioperl   Jason Stajich
• [Bioperl-l] failures on the stable branch   Jason Stajich
• [Bioperl-l] Primer3.pm problems.   Jason Stajich
• [Bioperl-l] failures on the stable branch   Jason Stajich
• [Bioperl-l] Makefile.PL and cvs.bioperl.org   Jason Stajich
• [Bioperl-l] Parsing a Genbank file to get the Comment line.   Jason Stajich
• [Bioperl-l] Mapping between aligment position and reference (1st) sequence position for MAF files   Jason Stajich
• [Bioperl-l] [Structure of remote GenBank files]   Jason Stajich
• [Bioperl-l] Ensembl Query   Jason Stajich
• [Bioperl-l] Parsing "hmmsearch" results - help   Jason Stajich
• [Bioperl-l] Bio::Serach::Result::ResultI   Jason Stajich
• [Bioperl-l] paml rst file parser   Jason Stajich
• [Bioperl-l] Returned mail: see transcript for details   Mail Delivery Subsystem
• [Bioperl-l] Re: warning   Technical Support
• [Bioperl-l] Mail delivery failed: returning message to sender   Mail Delivery System
• [Bioperl-l] StandAloneBlast and Shell Variable Question   James Thompson
• [Bioperl-l] Out of Office AutoReply: Protected Mail Delivery   Timo.Klewitz at SARTORIUS.com
• [Bioperl-l]ABI.pm and .ab1 files   Kevin Roland Viel
• [Bioperl-l] AlignIO: Sequence length appended to name in output   Iain Wallace
• [Bioperl-l] All mouse mRNAs   Andrew Walsh
• [Bioperl-l] module for pattern matching   Andrew Walsh
• [Bioperl-l] deleting string fragments?   James Wasmuth
• [Bioperl-l] Re: [Bioperl-guts-l] Difficulty to recover the OS line in Swissprot   James Wasmuth
• [Bioperl-l] Drawing gene structures without SeqIO in Bio::Graphics   Adam Woolfe
• [Bioperl-l] how to use pipe in perl script?   Zhou Yu
• [Bioperl-l] how to use pipe in perl script?   Zhou Yu
• [Bioperl-l] Allegato non consentito   Mail Server administrator
• [Bioperl-l] small change to Bio::Align::Utilities   avilella
• [Bioperl-l] Bio::AlignIO::phylip write_aln ignores line_length   avilella
• [Bioperl-l] Mapping between aligment position and reference (1st) sequence position for MAF files   avilella
• [Bioperl-l] Mapping between aligment position and reference (1st) sequence position for MAF files   avilella
• [Bioperl-l] medications without perscriptions for you!   bradford
• [Bioperl-l] CAS1N0: New Deal!! 50% Sign Up Bonus! reynolds excalibur   bryon
• [Bioperl-l] base content   gabriele bucci
• [Bioperl-l] any documentation on bioperl?   gabriele bucci
• [Bioperl-l] bioperl-run on windows XP   cr cd
• [Bioperl-l] Muscle Relaxers, Pain Relief and more.. Check it out!   chang
• [Bioperl-l] Ultimate Internet CAS1N0! midori velvetn   dante
• [Bioperl-l] CAS1N0: New Deal!! 50% Sign Up Bonus! bridges researchn   devon
• [Bioperl-l] Anonymous Valium, Soma, VIA-GRA. No one needs to know!   edmond
• [Bioperl-l] $3 a dose. FUC:K A'L`L W'E`E'K:END! (hfudwp)   ervin
• [Bioperl-l] Muscle Relaxers, Pain Relief and more.. Check it out!   ervin
• [Bioperl-l] Super hot CAS1N0 B0nus 0ffers! megan lauram   galen
• [Bioperl-l] Prescr:ip`ti`on drug's wi:th`out the pre:scription! (etxhhr)   garrett
• [Bioperl-l] Super hot CAS1N0 B0nus 0ffers! front242 jordan23w   garry
• [Bioperl-l] Having the Blast output of StandAloneBlast in a single file   omid gulban
• [Bioperl-l] Prescr`ip`tion drugs without the p:re'sc`ri`pt'ion! (ymojdd)   harold
• [Bioperl-l] Primer3.pm problems.   john herbert
• [Bioperl-l] Ensembl Query   john herbert
• [Bioperl-l] Ensembl Query   john herbert
• [Bioperl-l] SVG on the server   hz5 at njit.edu
• [Bioperl-l] SVG on the server   hz5 at njit.edu
• [Bioperl-l] CAS1N0: New Deal!! 50% Sign Up Bonus! mailman naomii   jeremy
• [Bioperl-l] Super hot CAS1N0 B0nus 0ffers! yomama rubyq   joel
• [Bioperl-l] Re: Improved document   john at mel.rpa.cs.nsw.gov.au
• [Bioperl-l] CAS1N0: New Deal!! 50% Sign Up Bonus! mailman james1u   keven
• [Bioperl-l] Super hot CAS1N0 B0nus 0ffers! zenith strawberx   kory
• [Bioperl-l] bio::graphics problem   mariano latorre
• [Bioperl-l] Error message when parsing Blast report   laurence.amilhat at biogemma.com
• [Bioperl-l] Ultimate Internet CAS1N0! tootsie ladybugs   leon
• [Bioperl-l] CAS1N0: New Deal!! 50% Sign Up Bonus! eugene slackerc   luciano
• [Bioperl-l] I would like to subscribe to this mailing list   mehta_sameet at vsnl.net
• [Bioperl-l] Pairwise seq. comarison   henrik nilsson
• [Bioperl-l] Problems with installing bioperl using PPM3   omid at rogers.com
• [Bioperl-l] Problems with installing bioperl using PPM3   omid at rogers.com
• [Bioperl-l] Problems with installing bioperl using PPM3   omid at rogers.com
• [Bioperl-l] All mouse mRNAs   pdavid at netvisao.pt
• [Bioperl-l] Distance between residues   KHOUEIRY pierre
• [Bioperl-l] module for pattern matching   gowthaman ramasamy
• [Bioperl-l] module for pattern matching- i got it thanx   gowthaman ramasamy
• [Bioperl-l] Ultimate Internet CAS1N0! gray buffyu   randell
• [Bioperl-l] Re: improved   refs at homelet.com
• [Bioperl-l] Bio::Root::Root.pm and taint   rich
• [Bioperl-l] Bio::Root::Root.pm and taint   rich
• [Bioperl-l] Segmentation fault   stephan rosecker
• [Bioperl-l] Segmentation fault   stephan rosecker
• [Bioperl-l] RE:Segmentation fault   stephan rosecker
• [Bioperl-l] Segmentation fault   stephan rosecker
• [Bioperl-l] RE:Segmentation fault   stephan rosecker
• [Bioperl-l] New attribut   stephan rosecker
• [Bioperl-l] parsing hmmpfam reports   stephan.rosecker at ish.de
• [Bioperl-l] hmmpfam report indexing   stephan.rosecker at ish.de
• [Bioperl-l] automated response   support
• [Bioperl-l] parse bl2seq report   szhan at uoguelph.ca
• [Bioperl-l] How to parse bl2seq report?   szhan at uoguelph.ca
• [Bioperl-l] How to parse bl2seq report?   szhan at uoguelph.ca
• [Bioperl-l] PR0ZAC on yourdoorstep. Anonymously.   tanner
• [Bioperl-l] Forget V1AGRA, there's a new game in town!   timothy
• [Bioperl-l] FDA Drug Better than V_I_A_G_R_A: Only $3 a dose! aylmer bozo   tommy
• [Bioperl-l] Anonymous Valium, Soma, VIA-GRA.   walter
• [Bioperl-l] Variation   wangqi
• [Bioperl-l] problem of installing bioperl 1.4: 404 NOT found   zqchenupenn

Last message date: Fri Apr 30 20:33:06 EST 2004
Archived on: Mon May 3 11:54:58 EST 2004

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