[Bioperl-l] Bio::Serach::Result::ResultI
Kan Nobuta
nobuta at dbi.udel.edu
Mon Apr 26 12:55:31 EDT 2004
Hi all,
I (think) installed bioperl on Mac OSX 10.3. I wrote a short script
(see below) and tested if the installation was successful or not.
my $in = Bio::SeqIO->new('-file'=>'./ATH1.pep', '-format'=>'Fasta');
while (my $seq = $in->next_seq() ) {
my @params = ('program'=>'blastp', 'outfile'=>'blast.out',
'database'=>'./ATH1.pep' );
my $factory = Bio::Tools::Run::StandAloneBlast->new(@params);
my $blast_report = $factory->blastall($seq);
print ref($blast_report), "\n";
my $result = $blast_report->next_result;
print ref($result), "\n";
}
I think "next_result" should return "Bio::Serach::Result::ResultI" but
my script returns "Bio::Serach::Result::BlastResult." Could anyone
help me to fix this problem? I would greatly appreciate any help.
Thank you in advance.
Best wishes,
Kan
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