[Bioperl-l] blastz parser

[Jason Stajich]

Karen -

You can convert the blastz lav output to axt or psl with Jim Kent's
lavToPsl or lavToAxt.

Bio::SearchIO can parse psl or axt, Bio::Tools::Blat can also parse psl
output. (I think there is an off-by-one error in SearchIO::psl that Elliot
M reported but it hasn't been fixed yet).

-jason
On Fri, 16 Apr 2004, Karen Hayden wrote:

> Hello all,
>     Is there a module to parse blastz output?
>
> Thanks,
> Karen
>
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu