[Bioperl-l] Storing Sequences and Alignments

[Hilmar Lapp]

biosql will certainly store your sequences and annotation, but the 
multiple sequence alignments will be a challenge at least, meaning 
nobody has tried it yet, and it wasn't designed with this capability in 
mind.

You've probably heard about chado. I dont actually know to which extent 
it is prepared to store multiple sequence alignments, but it may be 
worth checking out and/or asking on the gmod mailing list.

	-hilmar

On Friday, April 2, 2004, at 04:59  AM, michael watson (IAH-C) wrote:

> Hi
>
> I am after a database or schema that can store sequence and annotation 
> and also multiple sequence alignments.  I thought perhaps biosql might 
> do this, but I am not sure it does.
>
> Does anyone know of anything?
>
> Thanks
> Mick
>
>
>
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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